| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g11504 | 5:3,649,274-3,649,921 | + | C2H5g21158 | CX5g039717 | LOC_Os05g07890 | Os05g0171200 | - | Detail |
| C1H5g14842 | 5:3,653,044-3,656,701 | + | C2H5g11975 | CX5g038572 | LOC_Os05g07900 | Os05g0171300 | - | Detail |
| C1H5g05810 | 5:3,669,433-3,674,100 | + | C2H5g28875 | CX5g040454 | LOC_Os05g07940 | Os05g0171900 | - | Detail |
| C1H5g06487 | 5:3,679,246-3,680,409 | - | C2H5g13205 | CX5g040831 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g09811 | 5:3,682,475-3,683,767 | - | C2H5g23308 | CX5g040831 | LOC_Os05g07960 | Os05g0172100 | - | Detail |
| C1H5g28743 | 5:3,687,610-3,692,840 | - | C2H5g03657 | CX5g037090 | LOC_Os05g07980 | Os05g0172300 | - | Detail |
| C1H5g08333 | 5:3,696,830-3,700,752 | - | C2H5g03936 | CX5g038351 | LOC_Os05g08010 | Os05g0172500 | - | Detail |
| C1H5g18279 | 5:3,712,708-3,714,180 | + | - | CX5g038912 | - | - | - | Detail |
| C1H5g27827 | 5:3,717,017-3,719,965 | + | C2H5g07835 | CX5g040996 | LOC_Os05g08360 | Os05g0176000 | - | Detail |
| C1H5g22753 | 5:3,723,671-3,729,931 | - | C2H5g15897 | CX5g038136 | LOC_Os05g08370 | Os05g0176100 | - | Detail |
| C1H5g02275 | 5:3,739,188-3,741,590 | - | C2H5g24531 | CX5g040050 | LOC_Os05g08400 | Os05g0176400 | - | Detail |
| C1H5g15996 | 5:3,743,300-3,746,440 | - | C2H5g15763 | CX5g039063 | LOC_Os05g08410 | Os05g0176500 | - | Detail |
| C1H5g19736 | 5:3,746,652-3,749,108 | + | C2H5g16673 | CX5g039906 | LOC_Os05g08414 | Os05g0176600 | - | Detail |
| C1H5g07740 | 5:3,759,704-3,768,730 | - | C2H5g23491 | CX5g039146 | LOC_Os05g08430 | Os05g0176800 | BOR4, OsBOR4 | Detail |
| C1H5g26361 | 5:3,790,553-3,792,332 | + | C2H5g22969 | CX5g040267 | LOC_Os05g08450 | Os05g0177100 | - | Detail |
| C1H5g11821 | 5:3,800,983-3,803,223 | - | C2H5g14876 | CX5g040267 | LOC_Os05g08460 | Os05g0177400 | - | Detail |
| C1H5g18386 | 5:3,803,309-3,803,629 | - | C2H5g00540 | - | - | - | - | Detail |
| C1H5g12562 | 5:3,812,648-3,816,213 | + | C2H5g23095 | CX5g040475 | LOC_Os05g08490 | Os05g0177800 | - | Detail |
| C1H5g05273 | 5:3,823,371-3,828,084 | + | C2H5g03109 | CX5g039674 | LOC_Os05g08530 | Os05g0178000 | - | Detail |
| C1H5g26746 | 5:3,830,915-3,831,382 | - | C2H5g08820 | CX5g040319 | LOC_Os05g08540 | Os05g0178100 | GA3OX1, OsGA3ox1, GA3ox1, OsGA3OX1 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX11g013680 | 11:20,888,805-20,889,014 | + | - | - | - | Os11g0697600 | - | Detail |
| CX11g012147 | 11:20,894,907-20,895,179 | + | - | - | - | - | - | Detail |
| CX11g011195 | 11:20,905,545-20,906,033 | + | C1H11g23382 | C2H11g02930 | LOC_Os11g39810 | - | - | Detail |
| CX11g012120 | 11:20,911,265-20,911,589 | + | - | - | - | - | - | Detail |
| CX11g011371 | 11:20,954,407-20,954,659 | - | - | - | - | - | - | Detail |
| CX11g012401 | 11:20,970,849-20,972,802 | + | C1H11g06524 | C2H11g23504 | LOC_Os11g39920 | Os11g0652600 | - | Detail |
| CX11g011985 | 11:20,977,807-20,982,033 | + | C1H11g06927 | C2H11g08472 | LOC_Os11g39990 | Os11g0614400 | - | Detail |
| CX11g011994 | 11:20,985,907-20,994,368 | + | C1H11g02912 | C2H11g13443 | LOC_Os11g40009 | Os11g0614400 | - | Detail |
| CX11g014854 | 11:20,995,668-20,995,838 | - | - | - | - | Os07g0616100 | - | Detail |
| CX11g011698 | 11:21,002,127-21,003,132 | + | C1H11g27967 | C2H11g28230 | LOC_Os11g40030 | Os11g0614800 | Orysa;KRP3 | Detail |
| CX11g015016 | 11:21,011,334-21,014,688 | + | C1H11g17907 | C2H11g25142 | LOC_Os11g40070 | Os11g0614900 | - | Detail |
| CX11g011562 | 11:21,020,401-21,020,785 | - | C1H12g24303 | - | LOC_Os11g36320 | - | - | Detail |
| CX11g010899 | 11:21,025,455-21,031,538 | + | C1H11g26784 | C2H11g13572 | LOC_Os11g40080 | Os11g0615000 | OsPAH2 | Detail |
| CX11g012704 | 11:21,032,840-21,035,967 | + | C1H11g22695 | C2H11g10529 | LOC_Os11g40090 | Os11g0615100 | - | Detail |
| CX11g012416 | 11:21,037,010-21,040,027 | - | C1H11g02495 | C2H11g25439 | LOC_Os11g40100 | Os11g0615200 | - | Detail |
| CX11g014404 | 11:21,046,323-21,046,595 | + | C1H11g04908 | C2H11g10255 | LOC_Os11g29390 | Os11g0615250 | - | Detail |
| CX11g012372 | 11:21,048,161-21,048,322 | + | - | - | - | - | - | Detail |
| CX11g011344 | 11:21,055,401-21,055,631 | - | C1H11g08211 | - | LOC_Os11g40110 | Os11g0615300 | - | Detail |
| CX11g013156 | 11:21,056,925-21,057,419 | - | C1H11g11245 | C2H11g01653 | LOC_Os11g40120 | Os11g0615600 | - | Detail |
| CX11g012669 | 11:21,065,993-21,070,097 | - | C1H11g22217 | C2H11g01261 | LOC_Os11g40140 | Os11g0615700 | - | Detail |