| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g04613 | 3:6,241,187-6,242,617 | - | C2H3g04826 | CX3g030910 | LOC_Os03g12940 | Os03g0232000 | OsFBO13 | Detail |
| C1H3g30000 | 3:6,247,635-6,251,913 | - | C2H3g04774 | CX3g029956 | LOC_Os03g12950 | Os03g0232200 | - | Detail |
| C1H3g29239 | 3:6,268,484-6,268,779 | + | C2H4g27073 | - | - | - | - | Detail |
| C1H3g14582 | 3:6,268,806-6,269,027 | + | C2H4g11700 | CX3g029446 | - | Os02g0324200 | - | Detail |
| C1H3g07150 | 3:6,279,894-6,280,322 | + | C2H3g26123 | CX3g028212 | LOC_Os03g12990 | Os03g0232400 | - | Detail |
| C1H3g22613 | 3:6,284,313-6,284,713 | - | C2H3g04799 | CX3g028040 | - | Os02g0738300 | - | Detail |
| C1H3g28102 | 3:6,284,992-6,287,738 | + | C2H3g26449 | CX3g028651 | LOC_Os03g13000 | Os03g0232500 | - | Detail |
| C1H3g02271 | 3:6,293,199-6,294,578 | - | C2H3g15250 | CX3g031218 | LOC_Os03g13010 | Os03g0232600 | ELF1, OsPUB31, OsPUB75, TUD1, OsTUD1 | Detail |
| C1H3g01497 | 3:6,310,077-6,311,798 | - | C2H3g13166 | CX3g029569 | LOC_Os03g13030 | Os03g0232800 | - | Detail |
| C1H3g06697 | 3:6,312,892-6,316,654 | - | C2H3g05297 | CX3g027690 | LOC_Os03g13040 | Os03g0232900 | - | Detail |
| C1H3g26874 | 3:6,329,350-6,330,859 | + | C2H3g03038 | CX3g025391 | LOC_Os03g13050 | Os03g0233000 | - | Detail |
| C1H3g16800 | 3:6,332,793-6,333,953 | - | C2H3g18690 | CX3g030154 | LOC_Os03g13070 | Os03g0233200 | - | Detail |
| C1H3g06079 | 3:6,335,141-6,338,733 | - | C2H3g14812 | CX3g029185 | LOC_Os03g13080 | Os03g0233300 | OsLysM-RLK2, OsLYK5, OsNFR5/OsRLK2 | Detail |
| C1H3g06632 | 3:6,341,866-6,345,383 | + | C2H3g23005 | CX3g028548 | LOC_Os03g13100 | Os03g0233500 | - | Detail |
| C1H3g16553 | 3:6,349,440-6,353,368 | + | C2H3g09799 | CX3g029407 | LOC_Os03g13130 | Os03g0233800 | - | Detail |
| C1H3g27731 | 3:6,354,094-6,354,936 | + | C2H3g17247 | CX3g025432 | LOC_Os03g13140 | Os03g0233900 | Hb1, OsPgb1.1 | Detail |
| C1H3g19664 | 3:6,357,836-6,358,710 | + | C2H3g00667 | CX3g027207 | LOC_Os03g13150 | Os03g0234000 | - | Detail |
| C1H3g02151 | 3:6,360,956-6,361,945 | + | C2H3g02090 | CX3g030474 | LOC_Os03g13160 | Os03g0234100 | - | Detail |
| C1H3g22268 | 3:6,367,751-6,368,947 | + | C2H3g20297 | CX3g028385 | LOC_Os03g13180 | Os03g0234500 | - | Detail |
| C1H3g22029 | 3:6,370,718-6,375,395 | - | C2H3g00447 | CX3g027164 | LOC_Os03g13190 | Os03g0234600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX11g013221 | 11:17,420,470-17,424,607 | - | C1H11g20682 | C2H11g18443 | LOC_Os11g33090 | Os11g0536800 | - | Detail |
| CX11g011430 | 11:17,429,004-17,433,897 | + | C1H11g23306 | C2H11g14109 | LOC_Os11g33100 | Os11g0537300 | - | Detail |
| CX11g014344 | 11:17,434,485-17,435,186 | + | C1H11g02477 | C2H11g06443 | LOC_Os11g33110 | Os11g0537350 | - | Detail |
| CX11g013985 | 11:17,437,943-17,444,607 | - | C1H11g20153 | C2H11g23754 | LOC_Os11g33120 | Os11g0537400 | OsRbohI | Detail |
| CX11g014194 | 11:17,472,587-17,472,763 | + | - | - | - | - | - | Detail |
| CX11g012390 | 11:17,479,420-17,479,572 | - | C1H4g20138 | - | - | - | - | Detail |
| CX11g014853 | 11:17,498,279-17,508,360 | + | C1H11g10760 | C2H11g18474 | LOC_Os11g33240 | Os11g0538900 | - | Detail |
| CX11g014261 | 11:17,509,799-17,511,622 | + | C1H11g29963 | C2H11g03914 | LOC_Os11g33250 | Os11g0539000 | - | Detail |
| CX11g011714 | 11:17,513,444-17,514,353 | - | C1H11g23414 | C2H11g08978 | LOC_Os11g33260 | - | - | Detail |
| CX11g014319 | 11:17,525,490-17,526,170 | - | - | - | - | - | - | Detail |
| CX11g012324 | 11:17,528,790-17,531,445 | + | C1H11g12976 | C2H11g16112 | LOC_Os11g33270 | Os11g0539200 | OsXTR1 | Detail |
| CX11g013018 | 11:17,545,594-17,546,430 | - | C1H11g07408 | C2H11g15341 | LOC_Os11g33300 | Os11g0539500 | - | Detail |
| CX11g013597 | 11:17,550,936-17,553,000 | - | C1H11g27489 | C2H11g01588 | LOC_Os11g33310 | Os11g0539600 | - | Detail |
| CX11g012370 | 11:17,557,147-17,560,020 | + | C1H11g20456 | C2H11g01172 | LOC_Os11g33320 | Os11g0539700 | - | Detail |
| CX11g012565 | 11:17,561,091-17,569,319 | - | C1H11g07033 | C2H11g00813 | LOC_Os11g33330 | Os11g0539800 | - | Detail |
| CX11g012535 | 11:17,580,783-17,587,476 | - | C1H11g04650 | C2H11g24285 | LOC_Os11g41400 | Os11g0671600 | - | Detail |
| CX11g011980 | 11:17,608,107-17,613,909 | + | C1H11g23878 | C2H11g29888 | LOC_Os11g33394 | Os11g0540600 | - | Detail |
| CX11g011528 | 11:17,623,799-17,624,005 | - | - | - | - | - | - | Detail |
| CX11g013209 | 11:17,635,393-17,635,581 | + | - | - | - | - | - | Detail |
| CX11g011887 | 11:17,649,452-17,653,709 | + | C1H11g03207 | C2H11g22246 | LOC_Os11g33394 | Os11g0540600 | - | Detail |