| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g10607 | 3:13,300,845-13,301,153 | + | C2H3g19573 | CX3g029933 | LOC_Os03g25990 | Os03g0377100 | - | Detail |
| C1H3g00737 | 3:13,303,708-13,310,872 | + | C2H3g08354 | CX3g025508 | LOC_Os03g26000 | Os03g0377300 | - | Detail |
| C1H3g02559 | 3:13,311,513-13,320,069 | + | C2H3g12662 | CX3g025508 | LOC_Os03g26030 | Os03g0377500 | - | Detail |
| C1H3g26368 | 3:13,322,889-13,326,905 | - | C2H3g21234 | CX3g027228 | LOC_Os03g26044 | Os03g0377700 | OsCSLA5 | Detail |
| C1H3g10865 | 3:13,337,059-13,338,472 | + | C2H3g12418 | CX3g028269 | LOC_Os03g26070 | - | - | Detail |
| C1H3g26564 | 3:13,338,901-13,342,667 | + | C2H3g02469 | CX3g030093 | LOC_Os03g26080 | Os03g0378000 | OsAPY2 | Detail |
| C1H3g21733 | 3:13,352,760-13,359,155 | + | C2H3g20387 | CX3g025812 | LOC_Os03g26090 | Os03g0378200 | - | Detail |
| C1H3g27600 | 3:13,370,971-13,372,082 | - | C2H3g06097 | - | - | - | - | Detail |
| C1H3g28191 | 3:13,388,521-13,392,838 | + | C2H3g12084 | CX3g029246 | LOC_Os03g26200 | Os03g0379100 | - | Detail |
| C1H3g18201 | 3:13,395,395-13,397,375 | + | C2H3g20720 | CX3g024992 | LOC_Os03g26210 | Os03g0379300 | OsIRO3 | Detail |
| C1H3g08145 | 3:13,398,049-13,400,082 | - | C2H3g11313 | CX3g025371 | LOC_Os03g26220 | Os03g0379400 | - | Detail |
| C1H3g10024 | 3:13,401,803-13,403,772 | + | C2H3g22224 | CX3g029639 | LOC_Os03g26229 | Os03g0379500 | - | Detail |
| C1H3g30785 | 3:13,406,901-13,419,581 | + | C2H3g19366 | CX3g025942 | LOC_Os03g26250 | Os03g0379801 | - | Detail |
| C1H3g18376 | 3:13,425,327-13,426,013 | + | C2H3g00664 | - | LOC_Os03g26280 | - | - | Detail |
| C1H3g16642 | 3:13,426,143-13,426,821 | + | - | - | - | - | - | Detail |
| C1H3g09234 | 3:13,484,737-13,486,294 | - | C2H3g10036 | CX3g026850 | LOC_Os03g26430 | Os03g0381000 | - | Detail |
| C1H3g09560 | 3:13,487,854-13,494,339 | + | C2H3g18489 | CX3g026175 | LOC_Os03g26440 | Os03g0381100 | - | Detail |
| C1H3g28910 | 3:13,496,436-13,499,665 | + | C2H3g11401 | CX3g027360 | LOC_Os03g26450 | Os03g0381200 | - | Detail |
| C1H3g07176 | 3:13,500,077-13,502,107 | - | C2H3g07469 | CX3g027436 | LOC_Os03g26460 | Os03g0381300 | - | Detail |
| C1H3g24130 | 3:13,505,302-13,507,936 | + | C2H3g11622 | CX3g031147 | LOC_Os03g26480 | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004458 | 1:6,225,403-6,226,593 | + | C1H1g31834 | C2H1g09030 | LOC_Os01g12690 | Os01g0226700 | - | Detail |
| CX1g003172 | 1:6,233,383-6,235,295 | + | - | - | LOC_Os01g12700 | - | - | Detail |
| CX1g003495 | 1:6,241,767-6,250,246 | + | C1H1g16770 | C2H1g01170 | LOC_Os01g12710 | Os01g0227100 | - | Detail |
| CX1g000717 | 1:6,261,079-6,265,361 | + | C1H1g17285 | C2H1g13949 | LOC_Os01g12720 | Os01g0227200 | OsPERK1 | Detail |
| CX1g001842 | 1:6,266,652-6,269,760 | + | C1H1g25457 | C2H1g18702 | LOC_Os01g12730 | Os01g0227300 | - | Detail |
| CX1g005082 | 1:6,270,921-6,272,915 | + | C1H1g25274 | C2H1g07843 | LOC_Os01g12740 | Os01g0227400 | - | Detail |
| CX1g001031 | 1:6,275,691-6,278,696 | + | C1H1g23728 | C2H1g27903 | LOC_Os01g12750 | Os01g0227500 | - | Detail |
| CX1g005755 | 1:6,303,522-6,307,193 | + | C1H1g29762 | C2H1g18144 | LOC_Os01g12790 | Os01g0228200 | - | Detail |
| CX1g000008 | 1:6,307,731-6,310,624 | - | C1H1g00126 | C2H1g23747 | LOC_Os01g12800 | Os01g0228300 | - | Detail |
| CX1g001945 | 1:6,314,433-6,316,565 | + | C1H1g09783 | C2H1g03627 | LOC_Os01g12810 | Os01g0228400 | - | Detail |
| CX1g000835 | 1:6,317,214-6,318,719 | - | C1H1g01893 | C2H1g17734 | LOC_Os01g12820 | Os01g0228500 | - | Detail |
| CX1g004836 | 1:6,320,989-6,324,517 | - | C1H1g19893 | C2H1g24769 | LOC_Os01g12830 | Os01g0228600 | - | Detail |
| CX1g001640 | 1:6,327,813-6,330,643 | - | C1H1g14653 | C2H1g00699 | LOC_Os01g12840 | Os01g0228800 | - | Detail |
| CX1g006490 | 1:6,341,548-6,347,986 | + | C1H1g26396 | C2H1g15617 | LOC_Os01g12860 | Os01g0229000 | - | Detail |
| CX1g006720 | 1:6,350,120-6,353,250 | - | C1H1g13199 | C2H1g03922 | LOC_Os01g12870 | Os01g0229100 | - | Detail |
| CX1g003875 | 1:6,353,804-6,361,504 | + | C1H1g15790 | C2H1g14330 | LOC_Os01g12880 | Os01g0229200 | - | Detail |
| CX1g001622 | 1:6,385,112-6,389,787 | + | C1H1g29443 | C2H1g05009 | LOC_Os01g12890 | Os01g0229300 | CCP1, OsEMF1, DFO1, EMF1 | Detail |
| CX1g003284 | 1:6,391,193-6,393,541 | - | C1H1g08244 | C2H1g10198 | LOC_Os01g12900 | Os01g0229400 | RAC1, OsRAC1, OsRac1, Os Rac1 | Detail |
| CX1g003413 | 1:6,399,941-6,401,913 | + | C1H1g30145 | C2H1g13210 | LOC_Os01g12910 | Os01g0229500 | - | Detail |
| CX1g004766 | 1:6,402,707-6,403,441 | + | C1H1g25208 | C2H1g03678 | LOC_Os01g12920 | Os01g0229600 | - | Detail |