| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H2g04839 | 2:9,286,424-9,292,908 | - | C2H2g06770 | CX2g020121 | LOC_Os02g17460 | Os02g0274600 | - | Detail |
| C1H2g13080 | 2:9,294,659-9,299,722 | + | C2H2g12255 | CX2g019862 | LOC_Os02g17470 | Os02g0274700 | - | Detail |
| C1H2g20851 | 2:9,309,489-9,316,352 | + | C2H2g07148 | CX2g020679 | LOC_Os02g17500 | Os02g0274900 | - | Detail |
| C1H2g27766 | 2:9,321,715-9,322,970 | + | C2H2g16988 | CX2g021332 | LOC_Os02g17520 | Os02g0275100 | - | Detail |
| C1H2g18414 | 2:9,323,805-9,330,033 | - | C2H2g25493 | CX2g022654 | LOC_Os02g17534 | Os02g0275200 | - | Detail |
| C1H2g28570 | 2:9,352,531-9,357,435 | - | C2H2g11418 | CX2g024094 | LOC_Os02g17620 | Os02g0276200 | - | Detail |
| C1H2g09318 | 2:9,365,893-9,369,178 | - | C2H2g13253 | CX2g019729 | LOC_Os02g17640 | Os02g0276400 | - | Detail |
| C1H2g06211 | 2:9,370,161-9,378,467 | - | C2H2g02640 | CX2g023106 | LOC_Os02g17650 | Os02g0276500 | OsVTE1 | Detail |
| C1H2g04949 | 2:9,406,805-9,413,716 | - | C2H2g21214 | CX2g020993 | LOC_Os02g17680 | Os02g0276900 | - | Detail |
| C1H2g26261 | 2:9,423,589-9,427,459 | + | C2H2g07248 | CX2g020060 | - | Os08g0106700 | - | Detail |
| C1H2g06748 | 2:9,430,997-9,436,193 | + | C2H2g23233 | CX2g023495 | LOC_Os02g17700 | Os02g0277600 | - | Detail |
| C1H2g21417 | 2:9,437,083-9,438,617 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0553000 | - | Detail |
| C1H2g09887 | 2:9,438,752-9,439,781 | - | C2H2g21422 | CX2g019451 | LOC_Os02g17710 | Os02g0277700 | - | Detail |
| C1H2g04601 | 2:9,447,295-9,452,328 | + | C2H2g09294 | CX2g022207 | LOC_Os02g17760 | Os02g0278400 | - | Detail |
| C1H2g17404 | 2:9,453,585-9,453,983 | - | - | CX2g024163 | LOC_Os02g17770 | - | - | Detail |
| C1H2g04831 | 2:9,456,074-9,467,318 | - | C2H2g03135 | CX2g024821 | LOC_Os02g17780 | Os02g0278700 | OsCPS1, OsCPS1<sub>ent</sub> | Detail |
| C1H2g21563 | 2:9,490,847-9,493,855 | + | C2H2g23443 | CX2g020444 | LOC_Os02g17850 | Os02g0279600 | - | Detail |
| C1H2g29701 | 2:9,497,516-9,502,072 | + | C2H2g02230 | CX2g020861 | LOC_Os02g17860 | Os02g0279800 | - | Detail |
| C1H2g07597 | 2:9,512,281-9,514,682 | - | - | - | - | - | - | Detail |
| C1H2g23928 | 2:9,520,031-9,521,283 | + | C2H2g21745 | CX2g019485 | LOC_Os02g17880 | Os02g0280200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX11g011338 | 11:6,609,474-6,610,421 | - | C1H11g04130 | C2H11g26976 | LOC_Os11g13870 | Os11g0242600 | - | Detail |
| CX11g012360 | 11:6,613,598-6,616,971 | + | C1H11g00798 | C2H11g21556 | LOC_Os11g13880 | Os11g0242700 | - | Detail |
| CX11g013620 | 11:6,617,870-6,620,024 | + | C1H11g18756 | C2H11g16617 | LOC_Os11g13890 | Os11g0242800 | LHCB5 | Detail |
| CX11g012343 | 11:6,638,112-6,639,338 | - | C1H11g23539 | C2H11g07210 | LOC_Os11g13930 | Os11g0243300 | - | Detail |
| CX11g012090 | 11:6,652,297-6,652,461 | - | - | - | LOC_Os11g13934 | Os11g0243600 | - | Detail |
| CX11g014485 | 11:6,655,586-6,658,597 | - | C1H11g20957 | C2H11g26104 | LOC_Os11g13940 | Os11g0676200 | - | Detail |
| CX11g012355 | 11:6,660,200-6,660,415 | + | - | - | - | - | - | Detail |
| CX11g013412 | 11:6,698,781-6,699,799 | + | - | - | - | - | - | Detail |
| CX11g013552 | 11:6,701,390-6,701,569 | + | - | - | - | Os07g0137500 | - | Detail |
| CX11g013774 | 11:6,702,738-6,702,914 | + | - | - | - | Os02g0188201 | - | Detail |
| CX11g014048 | 11:6,707,844-6,708,113 | - | - | - | - | - | - | Detail |
| CX11g012230 | 11:6,712,047-6,713,507 | - | C1H11g00635 | C2H11g07080 | LOC_Os11g13970 | Os11g0244100 | - | Detail |
| CX11g013197 | 11:6,716,623-6,717,258 | - | C1H11g21033 | C2H11g07080 | LOC_Os11g13980 | Os11g0244200 | - | Detail |
| CX11g014379 | 11:6,719,466-6,726,067 | - | C1H11g12260 | C2H11g17324 | LOC_Os11g13990 | Os11g0244300 | - | Detail |
| CX11g013437 | 11:6,732,139-6,733,371 | - | C1H11g04021 | C2H11g17507 | LOC_Os11g14000 | Os11g0244600 | - | Detail |
| CX11g011026 | 11:6,737,695-6,745,077 | - | C1H11g19482 | C2H11g05464 | LOC_Os11g14010 | Os11g0244800 | OsAL11 | Detail |
| CX11g015026 | 11:6,749,100-6,750,950 | - | C1H11g13582 | C2H11g09302 | LOC_Os11g14020 | Os11g0244900 | - | Detail |
| CX11g013756 | 11:6,752,729-6,754,991 | + | C1H11g11117 | C2H11g20255 | LOC_Os11g14040 | Os11g0245100 | OsGSTZ4 | Detail |
| CX11g012888 | 11:6,760,493-6,765,806 | + | C1H11g29483 | C2H11g28082 | LOC_Os11g14050 | Os11g0245200 | - | Detail |
| CX11g013256 | 11:6,778,892-6,779,224 | + | - | - | - | - | - | Detail |