| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g12548 | 4:29,870,782-29,873,701 | - | C2H4g22497 | CX4g036015 | LOC_Os04g57510 | Os04g0670600 | - | Detail |
| C1H4g28067 | 4:29,874,706-29,880,746 | + | C2H4g29038 | CX4g033656 | LOC_Os04g57520 | Os04g0670800 | - | Detail |
| C1H4g24932 | 4:29,889,703-29,891,698 | - | C2H4g16367 | CX4g035876 | LOC_Os04g57530 | Os04g0670900 | SH4, sh4, SH3, SH3/SH4 | Detail |
| C1H4g07972 | 4:29,895,898-29,897,966 | - | C2H4g09789 | CX4g035340 | LOC_Os04g57540 | Os04g0671100 | - | Detail |
| C1H4g22743 | 4:29,898,781-29,902,244 | - | C2H4g30313 | CX4g036253 | LOC_Os04g57550 | Os04g0671200 | - | Detail |
| C1H4g10516 | 4:29,903,190-29,907,373 | - | C2H4g09887 | CX4g034946 | LOC_Os04g57560 | Os04g0671300 | PAO5, OsPAO5, OsAO2, AO2 | Detail |
| C1H4g18642 | 4:29,914,984-29,917,878 | - | C2H4g11022 | CX4g034217 | LOC_Os04g57590 | Os04g0671700 | OsDJ-1C | Detail |
| C1H4g10863 | 4:29,919,853-29,923,225 | - | C2H4g26599 | CX4g034187 | LOC_Os04g57600 | Os04g0671800 | - | Detail |
| C1H4g29876 | 4:29,925,187-29,932,498 | - | C2H4g28020 | CX4g036532 | LOC_Os04g57610 | Os04g0671900 | - | Detail |
| C1H4g03758 | 4:29,946,857-29,949,895 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57630 | Os04g0672100 | OsPSKR2 | Detail |
| C1H4g28972 | 4:29,961,894-29,967,859 | - | C2H4g16737 | CX4g031927 | LOC_Os04g57640 | Os04g0672200 | - | Detail |
| C1H4g18744 | 4:29,969,283-29,973,110 | - | C2H4g14699 | CX4g031948 | LOC_Os04g57650 | Os04g0672300 | - | Detail |
| C1H4g12099 | 4:29,979,174-29,981,416 | - | C2H4g22256 | CX4g032181 | LOC_Os04g57660 | Os04g0672600 | - | Detail |
| C1H4g02898 | 4:29,987,329-29,990,623 | + | C2H4g13935 | CX4g031387 | LOC_Os04g57680 | Os04g0672800 | - | Detail |
| C1H4g21333 | 4:29,991,614-29,994,014 | + | C2H4g25125 | CX4g034255 | LOC_Os04g57690 | Os04g0672900 | - | Detail |
| C1H4g29753 | 4:29,995,710-30,000,759 | - | C2H4g28032 | CX4g032895 | LOC_Os04g57700 | Os04g0673000 | - | Detail |
| C1H4g17441 | 4:30,023,341-30,023,957 | + | C2H4g17256 | CX4g036002 | LOC_Os04g57720 | Os04g0673300 | RR6, OsRR6, rr6, Rra6, OsRRA6 | Detail |
| C1H4g06545 | 4:30,030,545-30,034,430 | - | C2H4g16666 | CX4g033276 | LOC_Os04g57730 | Os04g0673400 | - | Detail |
| C1H4g12522 | 4:30,037,329-30,037,956 | - | C2H4g21541 | CX4g032931 | LOC_Os04g57750 | Os04g0673800 | - | Detail |
| C1H4g09977 | 4:30,039,911-30,040,867 | - | C2H4g03386 | - | LOC_Os04g57760 | Os04g0674000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000915 | 1:5,727,341-5,739,857 | - | C1H1g28664 | C2H1g17937 | LOC_Os01g11960 | Os01g0218900 | - | Detail |
| CX1g004702 | 1:5,752,182-5,752,928 | + | C1H1g00514 | C2H1g09244 | LOC_Os01g11970 | Os01g0219000 | - | Detail |
| CX1g003171 | 1:5,754,036-5,756,628 | + | C1H1g27900 | C2H1g22718 | LOC_Os01g11980 | Os01g0219100 | - | Detail |
| CX1g000508 | 1:5,757,439-5,760,378 | + | C1H1g26992 | C2H1g24979 | LOC_Os01g11990 | Os01g0219200 | ZYGO1 | Detail |
| CX1g003538 | 1:5,763,441-5,763,998 | + | - | C2H1g04486 | LOC_Os01g12000 | Os01g0219300 | - | Detail |
| CX1g005007 | 1:5,769,707-5,770,184 | + | C1H1g22028 | C2H1g07180 | LOC_Os01g12020 | Os01g0219500 | OsLTPL18 | Detail |
| CX1g005138 | 1:5,770,607-5,773,059 | - | C1H1g09843 | C2H1g00052 | LOC_Os01g12030 | Os01g0219600 | - | Detail |
| CX1g005599 | 1:5,786,870-5,790,114 | - | C1H1g27823 | C2H1g03412 | LOC_Os01g12070 | Os01g0220100 | OsCel9A | Detail |
| CX1g001222 | 1:5,794,302-5,800,168 | - | C1H1g03057 | C2H1g01177 | LOC_Os01g12080 | Os01g0220200 | - | Detail |
| CX1g003024 | 1:5,805,958-5,809,186 | + | C1H1g21223 | C2H1g26925 | LOC_Os01g12090 | Os01g0220300 | - | Detail |
| CX1g004887 | 1:5,814,029-5,814,775 | - | C1H1g25550 | C2H1g24521 | LOC_Os01g12110 | Os01g0220500 | - | Detail |
| CX1g004733 | 1:5,827,081-5,827,290 | - | - | - | - | - | - | Detail |
| CX1g004493 | 1:5,829,849-5,830,106 | + | C1H1g19821 | C2H1g00971 | - | - | - | Detail |
| CX1g005454 | 1:5,835,015-5,836,377 | - | C1H1g27706 | C2H1g25264 | LOC_Os01g12130 | Os01g0220700 | - | Detail |
| CX1g005696 | 1:5,840,933-5,845,836 | - | C1H1g25539 | C2H1g05073 | LOC_Os01g12160 | Os01g0221100 | - | Detail |
| CX1g003119 | 1:5,854,170-5,854,415 | - | - | - | - | - | - | Detail |
| CX1g004361 | 1:5,859,015-5,861,127 | - | C1H1g22662 | C2H1g06563 | LOC_Os01g12180 | Os01g0221300 | - | Detail |
| CX1g000729 | 1:5,865,814-5,866,059 | + | - | C2H1g28766 | LOC_Os01g12190 | Os01g0221400 | - | Detail |
| CX1g003668 | 1:5,868,776-5,870,686 | + | C1H1g19527 | C2H1g01549 | LOC_Os01g12200 | Os01g0221500 | - | Detail |
| CX1g006663 | 1:5,874,873-5,877,971 | + | C1H1g01490 | C2H1g21998 | LOC_Os01g12210 | Os01g0221600 | OsALMT4 | Detail |