| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g20543 | 3:1,614,850-1,617,133 | + | C2H3g29451 | CX3g030865 | LOC_Os03g03890 | Os03g0131000 | - | Detail |
| C1H3g20869 | 3:1,617,782-1,622,965 | - | C2H3g00921 | CX3g029241 | LOC_Os03g03900 | Os03g0131100 | OsNLP1 | Detail |
| C1H3g01716 | 3:1,627,947-1,628,354 | + | - | - | - | - | - | Detail |
| C1H3g07647 | 3:1,628,836-1,629,228 | + | - | - | - | - | - | Detail |
| C1H3g21207 | 3:1,630,393-1,633,428 | - | C2H3g05397 | CX3g027343 | LOC_Os03g03910 | Os03g0131200 | - | Detail |
| C1H3g29193 | 3:1,634,240-1,639,738 | - | C2H3g25663 | CX3g027343 | LOC_Os03g03920 | Os03g0131300 | - | Detail |
| C1H3g04201 | 3:1,641,297-1,646,965 | - | C2H3g07948 | CX3g029745 | LOC_Os03g03930 | Os03g0131400 | - | Detail |
| C1H3g28233 | 3:1,647,139-1,650,167 | + | C2H3g06029 | CX3g026999 | LOC_Os03g03949 | Os03g0131500 | - | Detail |
| C1H3g02854 | 3:1,651,001-1,652,057 | + | C2H3g05494 | CX3g028529 | LOC_Os03g03980 | Os03g0131800 | - | Detail |
| C1H3g31581 | 3:1,653,204-1,654,370 | - | C2H3g22495 | CX3g029556 | LOC_Os03g03990 | Os03g0131900 | OscpSRP43, cpSRP43 | Detail |
| C1H3g06072 | 3:1,657,769-1,661,602 | + | C2H3g11143 | CX3g026513 | LOC_Os03g04000 | Os03g0132000 | - | Detail |
| C1H3g07116 | 3:1,669,602-1,671,436 | + | C2H3g03337 | CX3g026620 | LOC_Os03g04020 | Os03g0132200 | - | Detail |
| C1H3g18409 | 3:1,675,184-1,678,381 | - | C2H3g07678 | CX3g028694 | LOC_Os03g04030 | Os03g0132300 | - | Detail |
| C1H3g11603 | 3:1,693,890-1,698,703 | + | C2H3g02332 | CX3g030334 | LOC_Os03g04050 | Os03g0132800 | OsBSK1-1 | Detail |
| C1H3g08655 | 3:1,701,202-1,702,185 | + | - | CX3g028275 | LOC_Os03g04060 | Os03g0132900 | - | Detail |
| C1H3g17948 | 3:1,703,247-1,704,773 | - | C2H3g25865 | CX3g030345 | LOC_Os03g04070 | Os03g0133000 | NAC22, ONAC022 | Detail |
| C1H3g06331 | 3:1,712,010-1,712,357 | + | C2H3g07517 | CX3g030686 | LOC_Os03g04080 | Os03g0133100 | - | Detail |
| C1H3g07259 | 3:1,713,085-1,716,579 | - | - | CX3g026302 | - | - | - | Detail |
| C1H3g25947 | 3:1,716,856-1,720,783 | + | C2H3g25074 | CX3g029725 | LOC_Os03g04100 | Os03g0133300 | ESV1, Os-ESV1, LA3 | Detail |
| C1H3g11058 | 3:1,721,907-1,723,340 | + | C2H3g16071 | CX3g025596 | LOC_Os03g04110 | Os03g0133400 | CEBiP, OsCEBiP | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX11g013186 | 11:3,418,058-3,423,261 | + | C1H11g17230 | C2H11g17623 | LOC_Os11g07930 | Os11g0181800 | - | Detail |
| CX11g012112 | 11:3,433,641-3,434,327 | - | C1H11g12035 | - | LOC_Os11g07950 | Os11g0182100 | - | Detail |
| CX11g013059 | 11:3,441,131-3,442,907 | - | C1H11g08570 | C2H11g19148 | LOC_Os11g07960 | Os11g0182200 | - | Detail |
| CX11g014550 | 11:3,450,116-3,455,758 | - | C1H11g21787 | C2H11g25418 | LOC_Os11g07970 | Os11g0182400 | - | Detail |
| CX11g015003 | 11:3,458,997-3,465,006 | - | C1H11g23072 | C2H11g13311 | LOC_Os11g07980 | Os11g0182500 | - | Detail |
| CX11g012132 | 11:3,479,516-3,484,950 | - | C1H11g20284 | C2H11g05426 | LOC_Os11g08020 | Os11g0182900 | - | Detail |
| CX11g013040 | 11:3,508,509-3,516,421 | + | C1H11g05910 | C2H11g12955 | LOC_Os11g08080 | Os11g0183700 | - | Detail |
| CX11g014081 | 11:3,524,050-3,524,301 | - | - | - | - | - | - | Detail |
| CX11g011589 | 11:3,524,848-3,532,657 | + | C1H11g28564 | C2H11g12360 | LOC_Os11g08090 | Os11g0183800 | - | Detail |
| CX11g013622 | 11:3,542,358-3,542,540 | - | - | - | - | - | - | Detail |
| CX11g014294 | 11:3,545,541-3,545,774 | - | - | - | - | - | - | Detail |
| CX11g012844 | 11:3,555,704-3,555,952 | - | - | - | - | Os11g0184350 | - | Detail |
| CX11g013912 | 11:3,584,679-3,586,301 | - | C1H11g09597 | C2H11g02712 | LOC_Os11g08210 | Os11g0184900 | NAC5, OsNAC5, NAC71, ONAC071, ONAC009, ONAC9, ONAC020, ONAC20, OnNAC5*, OnNAC5, OsNAC5/ONAC009 | Detail |
| CX11g014413 | 11:3,596,802-3,597,760 | + | C1H11g06049 | C2H11g30229 | LOC_Os11g08220 | Os11g0185100 | - | Detail |
| CX11g010990 | 11:3,598,762-3,599,073 | + | C1H11g16668 | C2H11g30229 | LOC_Os11g08220 | Os11g0185100 | - | Detail |
| CX11g012457 | 11:3,620,370-3,621,071 | - | - | - | - | - | - | Detail |
| CX11g012840 | 11:3,628,106-3,628,438 | + | - | C2H11g01841 | LOC_Os11g08060 | - | - | Detail |
| CX11g013131 | 11:3,663,194-3,667,542 | + | C1H11g22894 | C2H11g18389 | LOC_Os11g08300 | Os11g0186200 | - | Detail |
| CX11g014402 | 11:3,669,005-3,671,133 | + | C1H11g28283 | C2H11g28689 | LOC_Os11g08314 | Os11g0186300 | - | Detail |
| CX11g011762 | 11:3,673,232-3,674,566 | + | C1H11g04327 | C2H11g07463 | LOC_Os11g08314 | Os11g0186300 | - | Detail |