| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g21544 | 1:3,271,220-3,273,056 | + | C1H1g19012 | CX1g005114 | LOC_Os01g07770 | Os01g0172600 | - | Detail |
| C2H1g20728 | 1:3,275,547-3,276,119 | + | C1H1g10453 | CX1g002646 | LOC_Os01g07780 | Os01g0172800 | - | Detail |
| C2H1g22521 | 1:3,277,256-3,280,184 | + | C1H1g07102 | CX1g000708 | LOC_Os01g07790 | Os01g0172900 | - | Detail |
| C2H1g05856 | 1:3,280,342-3,281,598 | - | C1H1g22748 | CX1g005561 | LOC_Os01g07800 | Os01g0173000 | - | Detail |
| C2H1g12136 | 1:3,282,512-3,284,748 | - | C1H1g06548 | CX1g002508 | LOC_Os01g07810 | Os01g0173100 | - | Detail |
| C2H1g26590 | 1:3,292,936-3,294,694 | + | C1H1g18797 | CX1g005870 | LOC_Os01g07850 | Os01g0173600 | - | Detail |
| C2H1g11564 | 1:3,312,184-3,317,894 | + | C1H1g19078 | CX1g003910 | LOC_Os01g07870 | Os01g0173900 | - | Detail |
| C2H1g09395 | 1:3,318,906-3,319,741 | - | C1H1g28967 | CX1g004606 | LOC_Os01g07880 | Os01g0174000 | OsHY5L3, OsbZIP01, OsRE1 | Detail |
| C2H1g09850 | 1:3,325,028-3,328,400 | - | C1H1g04301 | CX1g005118 | LOC_Os01g07890 | Os01g0174100 | - | Detail |
| C2H1g12786 | 1:3,329,854-3,334,170 | - | C1H1g06431 | CX1g006673 | LOC_Os01g07910 | Os01g0174300 | - | Detail |
| C2H1g18737 | 1:3,336,797-3,339,694 | - | C1H1g24697 | CX1g002809 | LOC_Os01g07920 | Os01g0174500 | - | Detail |
| C2H1g10965 | 1:3,340,091-3,340,516 | - | C1H1g15491 | CX1g002809 | LOC_Os01g07930 | Os01g0174600 | - | Detail |
| C2H1g16794 | 1:3,340,560-3,341,084 | - | C1H1g15491 | CX1g002809 | LOC_Os01g07930 | Os01g0174600 | - | Detail |
| C2H1g29949 | 1:3,345,032-3,352,288 | - | C1H1g13210 | CX1g001687 | LOC_Os01g07940 | Os01g0174700 | - | Detail |
| C2H1g27987 | 1:3,351,947-3,355,151 | + | C1H1g13045 | CX1g001175 | LOC_Os01g07950 | Os01g0174900 | - | Detail |
| C2H1g22647 | 1:3,355,740-3,359,728 | - | C1H1g24398 | CX1g003986 | LOC_Os01g07960 | Os01g0175000 | - | Detail |
| C2H1g20408 | 1:3,363,911-3,364,207 | + | C1H1g17122 | CX1g001645 | - | Os01g0919400 | SPS1, sps1, OsSPS1, SPS | Detail |
| C2H1g24660 | 1:3,367,575-3,367,985 | - | - | CX1g000025 | LOC_Os01g07970 | Os01g0175100 | - | Detail |
| C2H1g30617 | 1:3,370,609-3,377,455 | - | C1H1g18087 | CX1g004096 | LOC_Os01g08000 | Os01g0188900 | - | Detail |
| C2H1g07461 | 1:3,379,120-3,380,550 | + | - | CX1g000676 | LOC_Os01g08010 | Os01g0175500 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000327 | 1:5,482,337-5,482,537 | - | - | - | - | - | - | Detail |
| CX1g003432 | 1:5,485,119-5,485,646 | + | - | C2H3g25696 | - | - | - | Detail |
| CX1g003866 | 1:5,496,797-5,498,872 | - | C1H1g17492 | C2H1g17634 | LOC_Os01g11570 | Os01g0214200 | - | Detail |
| CX1g004005 | 1:5,501,066-5,503,049 | + | C1H1g05723 | C2H1g27065 | LOC_Os01g11580 | Os01g0214300 | - | Detail |
| CX1g001697 | 1:5,507,828-5,509,761 | + | C1H1g20464 | C2H1g13662 | LOC_Os01g11590 | Os01g0214400 | - | Detail |
| CX1g002606 | 1:5,511,938-5,512,284 | + | C1H1g07596 | C2H1g29223 | LOC_Os01g11600 | Os01g0214500 | - | Detail |
| CX1g006288 | 1:5,555,835-5,556,209 | - | - | - | LOC_Os11g47039 | Os11g0692400 | - | Detail |
| CX1g001084 | 1:5,582,461-5,582,727 | + | - | - | - | - | - | Detail |
| CX1g002873 | 1:5,625,623-5,628,949 | - | C1H1g11369 | C2H1g01657 | LOC_Os01g11810 | Os01g0217000 | - | Detail |
| CX1g001632 | 1:5,632,459-5,633,585 | - | C1H1g25421 | C2H1g27711 | LOC_Os01g11830 | Os01g0330200 | - | Detail |
| CX1g005713 | 1:5,637,414-5,638,594 | + | C1H1g15985 | C2H1g08464 | LOC_Os01g11840 | Os01g0330200 | - | Detail |
| CX1g000279 | 1:5,639,601-5,642,048 | - | C1H1g06189 | C2H1g05180 | LOC_Os01g11850 | Os01g0217400 | - | Detail |
| CX1g005966 | 1:5,644,764-5,644,916 | + | C1H4g20138 | - | - | - | - | Detail |
| CX1g005289 | 1:5,645,835-5,651,902 | + | C1H1g09690 | C2H1g00290 | LOC_Os01g11860 | Os01g0217500 | - | Detail |
| CX1g006272 | 1:5,654,742-5,657,474 | + | C1H1g24673 | C2H1g04999 | LOC_Os01g11880 | Os01g0217800 | - | Detail |
| CX1g006867 | 1:5,665,995-5,677,254 | + | C1H1g21326 | C2H1g26585 | LOC_Os01g11900 | Os01g0218032 | ROS1A, ROS1a, OsROS1, TA2 | Detail |
| CX1g003932 | 1:5,686,225-5,687,188 | + | C1H1g12724 | C2H1g12652 | LOC_Os01g11910 | Os01g0218100 | - | Detail |
| CX1g004539 | 1:5,697,254-5,701,492 | + | C1H1g09961 | C2H1g17909 | LOC_Os01g11920 | Os01g0218200 | - | Detail |
| CX1g000608 | 1:5,713,663-5,718,794 | + | C1H1g30290 | C2H1g10690 | LOC_Os01g11940 | Os01g0218500 | - | Detail |
| CX1g003540 | 1:5,720,493-5,726,625 | - | C1H1g21863 | C2H1g22932 | LOC_Os01g11946 | Os01g0218700 | - | Detail |