| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g20863 | 5:20,315,791-20,319,332 | - | C2H5g01889 | CX5g039451 | LOC_Os05g42300 | Os05g0502800 | - | Detail |
| C1H5g12553 | 5:20,322,586-20,323,047 | + | C2H5g24320 | CX5g038016 | - | - | - | Detail |
| C1H5g02982 | 5:20,327,590-20,328,224 | - | C2H5g17995 | - | - | - | - | Detail |
| C1H5g23445 | 5:20,329,894-20,335,922 | - | C2H5g12051 | CX5g036854 | LOC_Os05g42330 | Os05g0503000 | - | Detail |
| C1H5g08819 | 5:20,338,894-20,339,802 | + | C2H5g11517 | CX5g038805 | LOC_Os05g42340 | Os05g0503100 | - | Detail |
| C1H5g25114 | 5:20,341,511-20,346,507 | - | C2H5g22444 | CX5g039611 | LOC_Os05g42350 | Os05g0503300 | - | Detail |
| C1H5g14084 | 5:20,348,141-20,349,559 | - | C2H5g05864 | - | LOC_Os05g42360 | - | - | Detail |
| C1H5g03299 | 5:20,396,339-20,398,263 | - | C2H5g04107 | CX5g040265 | LOC_Os05g43030 | Os05g0505900 | - | Detail |
| C1H5g03689 | 5:20,406,081-20,408,331 | + | C2H5g04456 | CX5g037777 | LOC_Os05g43040 | Os05g0506000 | - | Detail |
| C1H5g13929 | 5:20,409,244-20,410,298 | - | C2H5g11826 | CX5g039788 | LOC_Os05g43050 | Os05g0345700 | - | Detail |
| C1H5g16325 | 5:20,412,281-20,423,297 | + | C2H5g03697 | CX5g037317 | LOC_Os05g43060 | Os05g0506200 | - | Detail |
| C1H5g14740 | 5:20,431,862-20,433,709 | - | C2H5g00054 | CX5g038198 | LOC_Os05g43090 | Os05g0506450 | - | Detail |
| C1H5g02333 | 5:20,434,671-20,437,027 | - | C2H5g02904 | CX5g038198 | LOC_Os05g43100 | Os05g0506600 | - | Detail |
| C1H5g15254 | 5:20,449,296-20,449,945 | - | C2H5g15132 | CX5g038198 | LOC_Os05g43100 | Os05g0506500 | - | Detail |
| C1H5g17334 | 5:20,451,746-20,454,793 | - | C2H5g18861 | CX5g038198 | LOC_Os05g43110 | Os05g0506450 | - | Detail |
| C1H5g04181 | 5:20,458,092-20,460,585 | - | C2H5g12001 | CX5g038198 | LOC_Os05g43120 | Os05g0506800 | - | Detail |
| C1H5g14528 | 5:20,462,882-20,464,726 | - | C2H5g02931 | CX5g039806 | LOC_Os05g43130 | Os05g0506900 | - | Detail |
| C1H5g19105 | 5:20,469,228-20,469,719 | + | C2H5g18462 | - | LOC_Os05g43140 | Os05g0507000 | - | Detail |
| C1H5g01942 | 5:20,471,596-20,472,376 | + | - | - | - | - | - | Detail |
| C1H5g16549 | 5:20,473,368-20,477,672 | + | C2H5g14601 | CX5g038837 | LOC_Os05g43170 | Os05g0507300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000327 | 1:5,482,337-5,482,537 | - | - | - | - | - | - | Detail |
| CX1g003432 | 1:5,485,119-5,485,646 | + | - | C2H3g25696 | - | - | - | Detail |
| CX1g003866 | 1:5,496,797-5,498,872 | - | C1H1g17492 | C2H1g17634 | LOC_Os01g11570 | Os01g0214200 | - | Detail |
| CX1g004005 | 1:5,501,066-5,503,049 | + | C1H1g05723 | C2H1g27065 | LOC_Os01g11580 | Os01g0214300 | - | Detail |
| CX1g001697 | 1:5,507,828-5,509,761 | + | C1H1g20464 | C2H1g13662 | LOC_Os01g11590 | Os01g0214400 | - | Detail |
| CX1g002606 | 1:5,511,938-5,512,284 | + | C1H1g07596 | C2H1g29223 | LOC_Os01g11600 | Os01g0214500 | - | Detail |
| CX1g006288 | 1:5,555,835-5,556,209 | - | - | - | LOC_Os11g47039 | Os11g0692400 | - | Detail |
| CX1g001084 | 1:5,582,461-5,582,727 | + | - | - | - | - | - | Detail |
| CX1g002873 | 1:5,625,623-5,628,949 | - | C1H1g11369 | C2H1g01657 | LOC_Os01g11810 | Os01g0217000 | - | Detail |
| CX1g001632 | 1:5,632,459-5,633,585 | - | C1H1g25421 | C2H1g27711 | LOC_Os01g11830 | Os01g0330200 | - | Detail |
| CX1g005713 | 1:5,637,414-5,638,594 | + | C1H1g15985 | C2H1g08464 | LOC_Os01g11840 | Os01g0330200 | - | Detail |
| CX1g000279 | 1:5,639,601-5,642,048 | - | C1H1g06189 | C2H1g05180 | LOC_Os01g11850 | Os01g0217400 | - | Detail |
| CX1g005966 | 1:5,644,764-5,644,916 | + | C1H4g20138 | - | - | - | - | Detail |
| CX1g005289 | 1:5,645,835-5,651,902 | + | C1H1g09690 | C2H1g00290 | LOC_Os01g11860 | Os01g0217500 | - | Detail |
| CX1g006272 | 1:5,654,742-5,657,474 | + | C1H1g24673 | C2H1g04999 | LOC_Os01g11880 | Os01g0217800 | - | Detail |
| CX1g006867 | 1:5,665,995-5,677,254 | + | C1H1g21326 | C2H1g26585 | LOC_Os01g11900 | Os01g0218032 | ROS1A, ROS1a, OsROS1, TA2 | Detail |
| CX1g003932 | 1:5,686,225-5,687,188 | + | C1H1g12724 | C2H1g12652 | LOC_Os01g11910 | Os01g0218100 | - | Detail |
| CX1g004539 | 1:5,697,254-5,701,492 | + | C1H1g09961 | C2H1g17909 | LOC_Os01g11920 | Os01g0218200 | - | Detail |
| CX1g000608 | 1:5,713,663-5,718,794 | + | C1H1g30290 | C2H1g10690 | LOC_Os01g11940 | Os01g0218500 | - | Detail |
| CX1g003540 | 1:5,720,493-5,726,625 | - | C1H1g21863 | C2H1g22932 | LOC_Os01g11946 | Os01g0218700 | - | Detail |