| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g05084 | 4:11,863,255-11,864,445 | + | C2H4g22895 | CX4g035356 | LOC_Os04g24340 | Os04g0308600 | - | Detail |
| C1H4g16845 | 4:11,868,610-11,869,652 | + | - | - | - | - | - | Detail |
| C1H4g01555 | 4:11,957,716-11,958,078 | + | C2H4g26507 | CX4g035129 | LOC_Os04g24510 | Os04g0310400 | - | Detail |
| C1H4g08571 | 4:11,958,811-11,960,363 | + | C2H4g25559 | CX4g033408 | LOC_Os04g24510 | Os04g0310400 | - | Detail |
| C1H4g07065 | 4:11,963,297-11,968,153 | - | C2H4g07407 | - | LOC_Os04g24520 | Os04g0310500 | - | Detail |
| C1H4g23308 | 4:11,972,586-11,973,791 | - | C2H4g29321 | - | - | - | - | Detail |
| C1H4g20048 | 4:11,973,891-11,974,403 | - | C2H4g29321 | - | - | - | - | Detail |
| C1H4g15278 | 4:11,982,485-11,984,643 | - | C2H4g23104 | CX4g035166 | LOC_Os04g24530 | Os04g0310800 | OsACS9, 4CL4, OsACOS12 | Detail |
| C1H4g04617 | 4:11,991,620-12,002,487 | + | C2H4g13485 | CX4g034666 | LOC_Os04g24550 | Os04g0311100 | - | Detail |
| C1H4g30413 | 4:12,008,236-12,010,761 | + | C2H4g02221 | CX4g033212 | LOC_Os04g24600 | Os04g0311400 | - | Detail |
| C1H4g11309 | 4:12,011,002-12,015,044 | - | C2H4g15445 | CX4g032994 | LOC_Os04g24610 | - | - | Detail |
| C1H4g12708 | 4:12,058,821-12,060,161 | + | C2H4g11588 | CX4g033613 | LOC_Os04g24750 | Os04g0312500 | - | Detail |
| C1H4g18588 | 4:12,115,464-12,117,104 | - | - | CX4g032564 | LOC_Os04g24820 | Os04g0313500 | - | Detail |
| C1H4g01572 | 4:12,168,085-12,168,409 | + | - | - | LOC_Os04g24830 | Os04g0324550 | - | Detail |
| C1H4g16494 | 4:12,194,592-12,195,130 | - | C2H4g17738 | CX4g036367 | LOC_Os04g25820 | Os04g0313900 | - | Detail |
| C1H4g00441 | 4:12,197,211-12,198,713 | - | C2H4g21441 | CX4g036367 | LOC_Os04g24850 | Os04g0324100 | - | Detail |
| C1H4g19496 | 4:12,222,324-12,225,162 | - | C2H4g23030 | - | - | - | - | Detail |
| C1H4g08388 | 4:12,225,966-12,226,488 | - | C2H4g00602 | CX4g036087 | LOC_Os04g25740 | Os04g0314500 | - | Detail |
| C1H4g03848 | 4:12,268,051-12,269,435 | + | C2H4g15697 | - | - | - | - | Detail |
| C1H4g11483 | 4:12,289,604-12,291,195 | + | C2H4g29155 | CX4g033259 | LOC_Os04g25140 | Os04g0316800 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000327 | 1:5,482,337-5,482,537 | - | - | - | - | - | - | Detail |
| CX1g003432 | 1:5,485,119-5,485,646 | + | - | C2H3g25696 | - | - | - | Detail |
| CX1g003866 | 1:5,496,797-5,498,872 | - | C1H1g17492 | C2H1g17634 | LOC_Os01g11570 | Os01g0214200 | - | Detail |
| CX1g004005 | 1:5,501,066-5,503,049 | + | C1H1g05723 | C2H1g27065 | LOC_Os01g11580 | Os01g0214300 | - | Detail |
| CX1g001697 | 1:5,507,828-5,509,761 | + | C1H1g20464 | C2H1g13662 | LOC_Os01g11590 | Os01g0214400 | - | Detail |
| CX1g002606 | 1:5,511,938-5,512,284 | + | C1H1g07596 | C2H1g29223 | LOC_Os01g11600 | Os01g0214500 | - | Detail |
| CX1g006288 | 1:5,555,835-5,556,209 | - | - | - | LOC_Os11g47039 | Os11g0692400 | - | Detail |
| CX1g001084 | 1:5,582,461-5,582,727 | + | - | - | - | - | - | Detail |
| CX1g002873 | 1:5,625,623-5,628,949 | - | C1H1g11369 | C2H1g01657 | LOC_Os01g11810 | Os01g0217000 | - | Detail |
| CX1g001632 | 1:5,632,459-5,633,585 | - | C1H1g25421 | C2H1g27711 | LOC_Os01g11830 | Os01g0330200 | - | Detail |
| CX1g005713 | 1:5,637,414-5,638,594 | + | C1H1g15985 | C2H1g08464 | LOC_Os01g11840 | Os01g0330200 | - | Detail |
| CX1g000279 | 1:5,639,601-5,642,048 | - | C1H1g06189 | C2H1g05180 | LOC_Os01g11850 | Os01g0217400 | - | Detail |
| CX1g005966 | 1:5,644,764-5,644,916 | + | C1H4g20138 | - | - | - | - | Detail |
| CX1g005289 | 1:5,645,835-5,651,902 | + | C1H1g09690 | C2H1g00290 | LOC_Os01g11860 | Os01g0217500 | - | Detail |
| CX1g006272 | 1:5,654,742-5,657,474 | + | C1H1g24673 | C2H1g04999 | LOC_Os01g11880 | Os01g0217800 | - | Detail |
| CX1g006867 | 1:5,665,995-5,677,254 | + | C1H1g21326 | C2H1g26585 | LOC_Os01g11900 | Os01g0218032 | ROS1A, ROS1a, OsROS1, TA2 | Detail |
| CX1g003932 | 1:5,686,225-5,687,188 | + | C1H1g12724 | C2H1g12652 | LOC_Os01g11910 | Os01g0218100 | - | Detail |
| CX1g004539 | 1:5,697,254-5,701,492 | + | C1H1g09961 | C2H1g17909 | LOC_Os01g11920 | Os01g0218200 | - | Detail |
| CX1g000608 | 1:5,713,663-5,718,794 | + | C1H1g30290 | C2H1g10690 | LOC_Os01g11940 | Os01g0218500 | - | Detail |
| CX1g003540 | 1:5,720,493-5,726,625 | - | C1H1g21863 | C2H1g22932 | LOC_Os01g11946 | Os01g0218700 | - | Detail |