| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g30555 | 3:9,896,401-9,897,018 | + | C1H3g30348 | CX3g030611 | LOC_Os03g19780 | Os03g0311600 | - | Detail |
| C2H3g20097 | 3:9,924,788-9,936,112 | + | C1H3g27309 | CX3g025645 | LOC_Os03g19870 | Os03g0312600 | - | Detail |
| C2H3g03722 | 3:9,927,638-9,929,795 | - | C1H3g28649 | CX3g026953 | LOC_Os03g19840 | Os03g0312300 | - | Detail |
| C2H3g16430 | 3:9,939,947-9,942,748 | + | C1H3g17775 | CX3g029208 | LOC_Os03g19890 | Os03g0313000 | - | Detail |
| C2H3g25727 | 3:9,943,750-9,946,030 | - | C1H3g19322 | CX3g025344 | LOC_Os03g19900 | Os03g0313100 | - | Detail |
| C2H3g16070 | 3:9,962,482-9,967,523 | - | C1H3g29669 | CX3g026685 | LOC_Os03g19920 | Os03g0313300 | - | Detail |
| C2H3g06268 | 3:9,972,081-9,976,053 | + | C1H3g10646 | CX3g029276 | LOC_Os03g19930 | Os03g0313600 | - | Detail |
| C2H3g30521 | 3:9,980,242-9,980,544 | - | C1H3g19201 | CX3g031341 | LOC_Os03g19940 | Os03g0313800 | - | Detail |
| C2H3g00659 | 3:9,985,452-9,989,194 | + | C1H3g16128 | CX3g028576 | LOC_Os03g19960 | Os03g0314100 | - | Detail |
| C2H3g06742 | 3:9,989,624-9,994,926 | - | C1H3g20812 | CX3g025949 | LOC_Os03g19970 | Os03g0314200 | - | Detail |
| C2H3g04215 | 3:9,999,494-10,001,440 | + | C1H3g05706 | CX3g028739 | LOC_Os03g19980 | Os03g0314400 | - | Detail |
| C2H3g25214 | 3:10,012,256-10,015,341 | + | C1H3g20485 | CX3g029467 | LOC_Os03g19990 | Os03g0314500 | - | Detail |
| C2H3g21031 | 3:10,019,797-10,021,050 | + | C1H3g18195 | CX3g027957 | LOC_Os03g20010 | Os03g0314700 | - | Detail |
| C2H3g01699 | 3:10,024,031-10,024,813 | + | C1H3g02376 | CX3g027957 | - | - | - | Detail |
| C2H3g06553 | 3:10,032,472-10,037,012 | - | C1H3g19914 | CX3g027685 | LOC_Os03g20020 | Os03g0314800 | OsNIN1 | Detail |
| C2H3g07740 | 3:10,039,607-10,041,751 | + | C1H3g29631 | CX3g026874 | - | - | - | Detail |
| C2H3g15105 | 3:10,054,718-10,056,834 | - | C1H3g14664 | CX3g029724 | LOC_Os03g20090 | Os03g0315400 | OsMYB2 | Detail |
| C2H3g14730 | 3:10,079,852-10,084,190 | - | C1H3g20197 | CX3g031333 | LOC_Os03g20100 | Os03g0315800 | ASL4 | Detail |
| C2H3g02965 | 3:10,095,893-10,097,578 | + | C1H3g21365 | CX3g026763 | LOC_Os03g20120 | Os03g0316200 | OsGolS1 | Detail |
| C2H3g20528 | 3:10,108,363-10,111,015 | + | C1H3g25401 | CX3g027966 | LOC_Os03g20170 | Os03g0316900 | OsABCI16 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004422 | 1:5,259,813-5,263,252 | - | C1H1g22199 | C2H1g00003 | LOC_Os01g11150 | Os01g0209700 | GA2ox7 | Detail |
| CX1g004758 | 1:5,274,970-5,277,044 | - | C1H1g04985 | C2H1g04035 | LOC_Os01g11160 | Os01g0209800 | - | Detail |
| CX1g006209 | 1:5,283,182-5,283,353 | + | - | - | - | - | - | Detail |
| CX1g006771 | 1:5,287,260-5,288,920 | - | C1H1g26396 | C2H1g16459 | LOC_Os01g11200 | Os01g0210200 | - | Detail |
| CX1g001982 | 1:5,290,346-5,291,557 | + | C1H1g27615 | C2H1g10978 | LOC_Os01g11210 | Os01g0210300 | - | Detail |
| CX1g004173 | 1:5,291,834-5,293,957 | - | C1H1g05366 | C2H1g29549 | LOC_Os01g11220 | Os01g0210400 | OsTOD1 | Detail |
| CX1g001527 | 1:5,294,847-5,295,658 | - | C1H1g22960 | C2H1g12111 | LOC_Os01g11230 | Os01g0210500 | - | Detail |
| CX1g004127 | 1:5,298,536-5,299,036 | - | - | C2H1g23743 | LOC_Os01g11240 | Os01g0210600 | - | Detail |
| CX1g003904 | 1:5,303,489-5,305,102 | + | - | - | - | - | - | Detail |
| CX1g004305 | 1:5,306,611-5,306,781 | + | - | - | - | - | - | Detail |
| CX1g000720 | 1:5,308,155-5,310,443 | + | - | - | - | - | - | Detail |
| CX1g002610 | 1:5,309,248-5,313,113 | - | C1H1g12886 | C2H1g05349 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| CX1g004526 | 1:5,316,480-5,320,681 | + | C1H1g30027 | C2H1g07302 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| CX1g006413 | 1:5,381,547-5,393,635 | + | C1H1g25024 | C2H1g30364 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| CX1g004990 | 1:5,402,080-5,407,002 | + | C1H1g24516 | C2H1g07400 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| CX1g007192 | 1:5,407,844-5,409,568 | - | C1H1g10197 | C2H1g07852 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| CX1g006430 | 1:5,420,747-5,420,992 | - | - | - | - | - | - | Detail |
| CX1g000251 | 1:5,448,257-5,450,074 | + | - | C2H1g03845 | LOC_Os01g11510 | Os01g0213300 | - | Detail |
| CX1g001182 | 1:5,456,522-5,457,226 | - | C1H1g26340 | C2H1g20281 | LOC_Os01g11520 | Os01g0213400 | - | Detail |
| CX1g004394 | 1:5,472,691-5,474,076 | - | C1H1g28036 | C2H1g27187 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |