| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g09530 | 1:16,867,209-16,872,249 | + | C2H1g03532 | CX1g000669 | LOC_Os01g32660 | Os01g0510100 | OsMKK6, OsMEK1 | Detail |
| C1H1g03786 | 1:16,883,203-16,897,666 | + | C2H1g05772 | CX1g001061 | LOC_Os01g32710 | Os01g0510500 | - | Detail |
| C1H1g15241 | 1:16,898,558-16,902,319 | - | C2H1g08671 | CX1g004721 | LOC_Os01g32730 | Os01g0510600 | OsFLU1, OXP | Detail |
| C1H1g26631 | 1:16,910,926-16,918,620 | - | C2H1g26446 | CX1g000908 | LOC_Os01g32750 | Os01g0510800 | - | Detail |
| C1H1g16518 | 1:16,964,671-16,967,042 | - | C2H1g29547 | CX1g002333 | LOC_Os01g32780 | Os01g0511100 | OsUSP5 | Detail |
| C1H1g30895 | 1:16,968,817-16,971,956 | - | C2H1g25988 | CX1g000349 | LOC_Os01g32790 | Os01g0511200 | - | Detail |
| C1H1g00873 | 1:16,973,627-16,977,112 | - | C2H1g01415 | CX1g005541 | LOC_Os01g32800 | Os01g0511300 | OsRpn9a | Detail |
| C1H1g16898 | 1:16,992,666-16,998,375 | - | C2H1g19462 | CX1g003225 | LOC_Os01g32830 | Os01g0511600 | OsPLGG1 | Detail |
| C1H1g25757 | 1:17,034,723-17,042,587 | + | C2H1g19337 | CX1g003635 | LOC_Os01g32870 | Os01g0512100 | - | Detail |
| C1H1g18492 | 1:17,067,242-17,068,192 | + | C2H1g17681 | - | - | - | - | Detail |
| C1H1g25480 | 1:17,068,830-17,070,271 | + | C2H1g17712 | CX1g001290 | LOC_Os01g32900 | - | - | Detail |
| C1H1g22771 | 1:17,075,984-17,076,694 | + | C2H1g03966 | CX1g001290 | LOC_Os01g32920 | Os01g0512700 | - | Detail |
| C1H1g27769 | 1:17,079,311-17,080,050 | + | C2H1g26017 | CX1g001406 | LOC_Os01g32930 | Os01g0512800 | - | Detail |
| C1H1g01614 | 1:17,082,984-17,084,091 | - | - | - | - | - | - | Detail |
| C1H1g02880 | 1:17,088,126-17,091,283 | - | C2H1g24494 | CX1g004321 | LOC_Os01g32964 | Os01g0513100 | - | Detail |
| C1H1g13876 | 1:17,101,375-17,110,252 | - | C2H1g05942 | CX1g004574 | LOC_Os01g32980 | Os01g0513200 | - | Detail |
| C1H1g02604 | 1:17,118,128-17,121,445 | + | C2H1g28038 | CX1g003028 | LOC_Os01g33000 | Os01g0513400 | - | Detail |
| C1H1g22987 | 1:17,127,673-17,129,339 | - | C2H1g27810 | CX1g006725 | LOC_Os01g33020 | Os01g0513700 | - | Detail |
| C1H1g30759 | 1:17,131,015-17,133,046 | - | C2H1g12307 | CX1g007248 | LOC_Os01g33030 | Os01g0513800 | - | Detail |
| C1H1g09298 | 1:17,149,070-17,155,708 | + | C2H1g12454 | CX1g000923 | LOC_Os01g33040 | Os01g0513900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004422 | 1:5,259,813-5,263,252 | - | C1H1g22199 | C2H1g00003 | LOC_Os01g11150 | Os01g0209700 | GA2ox7 | Detail |
| CX1g004758 | 1:5,274,970-5,277,044 | - | C1H1g04985 | C2H1g04035 | LOC_Os01g11160 | Os01g0209800 | - | Detail |
| CX1g006209 | 1:5,283,182-5,283,353 | + | - | - | - | - | - | Detail |
| CX1g006771 | 1:5,287,260-5,288,920 | - | C1H1g26396 | C2H1g16459 | LOC_Os01g11200 | Os01g0210200 | - | Detail |
| CX1g001982 | 1:5,290,346-5,291,557 | + | C1H1g27615 | C2H1g10978 | LOC_Os01g11210 | Os01g0210300 | - | Detail |
| CX1g004173 | 1:5,291,834-5,293,957 | - | C1H1g05366 | C2H1g29549 | LOC_Os01g11220 | Os01g0210400 | OsTOD1 | Detail |
| CX1g001527 | 1:5,294,847-5,295,658 | - | C1H1g22960 | C2H1g12111 | LOC_Os01g11230 | Os01g0210500 | - | Detail |
| CX1g004127 | 1:5,298,536-5,299,036 | - | - | C2H1g23743 | LOC_Os01g11240 | Os01g0210600 | - | Detail |
| CX1g003904 | 1:5,303,489-5,305,102 | + | - | - | - | - | - | Detail |
| CX1g004305 | 1:5,306,611-5,306,781 | + | - | - | - | - | - | Detail |
| CX1g000720 | 1:5,308,155-5,310,443 | + | - | - | - | - | - | Detail |
| CX1g002610 | 1:5,309,248-5,313,113 | - | C1H1g12886 | C2H1g05349 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| CX1g004526 | 1:5,316,480-5,320,681 | + | C1H1g30027 | C2H1g07302 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| CX1g006413 | 1:5,381,547-5,393,635 | + | C1H1g25024 | C2H1g30364 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| CX1g004990 | 1:5,402,080-5,407,002 | + | C1H1g24516 | C2H1g07400 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| CX1g007192 | 1:5,407,844-5,409,568 | - | C1H1g10197 | C2H1g07852 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| CX1g006430 | 1:5,420,747-5,420,992 | - | - | - | - | - | - | Detail |
| CX1g000251 | 1:5,448,257-5,450,074 | + | - | C2H1g03845 | LOC_Os01g11510 | Os01g0213300 | - | Detail |
| CX1g001182 | 1:5,456,522-5,457,226 | - | C1H1g26340 | C2H1g20281 | LOC_Os01g11520 | Os01g0213400 | - | Detail |
| CX1g004394 | 1:5,472,691-5,474,076 | - | C1H1g28036 | C2H1g27187 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |