| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g28168 | 1:9,851,016-9,852,330 | + | C2H1g30365 | CX1g004741 | LOC_Os01g19440 | Os01g0743200 | - | Detail |
| C1H1g17298 | 1:9,852,438-9,858,641 | - | C2H1g05510 | CX1g001479 | LOC_Os01g19450 | Os01g0300200 | - | Detail |
| C1H1g08590 | 1:9,871,111-9,884,660 | - | C2H1g09549 | CX1g000059 | LOC_Os01g19470 | Os01g0300600 | - | Detail |
| C1H1g05959 | 1:9,904,177-9,909,869 | + | C2H1g24739 | CX1g005474 | LOC_Os01g19480 | Os01g0300900 | - | Detail |
| C1H1g20660 | 1:9,911,171-9,914,439 | - | C2H1g16884 | CX1g000842 | LOC_Os01g19490 | Os01g0301000 | - | Detail |
| C1H1g04052 | 1:9,917,873-9,919,595 | - | C2H1g21006 | CX1g000842 | LOC_Os01g19529 | Os01g0301500 | - | Detail |
| C1H1g04053 | 1:9,922,877-9,927,035 | - | C2H1g04937 | CX1g001057 | LOC_Os01g19548 | Os01g0301700 | - | Detail |
| C1H1g01882 | 1:9,932,769-9,933,050 | - | C2H1g30243 | CX1g000700 | LOC_Os01g19610 | Os01g0301900 | - | Detail |
| C1H1g28444 | 1:9,934,721-9,936,104 | - | C2H1g30243 | CX1g000700 | LOC_Os01g19610 | Os01g0562600 | - | Detail |
| C1H1g07961 | 1:9,941,507-9,941,964 | + | C2H1g25243 | CX1g005625 | - | Os01g0302000 | - | Detail |
| C1H1g08220 | 1:9,966,917-9,967,771 | + | C2H1g20277 | CX1g001886 | LOC_Os01g19694 | Os01g0302500 | OSH6 | Detail |
| C1H1g25873 | 1:9,973,023-9,976,351 | + | C2H1g00180 | CX1g003033 | LOC_Os01g19694 | Os01g0302500 | OSH6 | Detail |
| C1H1g01787 | 1:9,986,209-9,986,410 | + | C2H1g08564 | CX1g002448 | LOC_Os01g13880 | Os01g0302900 | - | Detail |
| C1H1g30343 | 1:9,999,719-10,010,142 | + | C2H1g22139 | CX1g002241 | LOC_Os01g19760 | Os01g0303200 | - | Detail |
| C1H1g08611 | 1:10,010,405-10,011,674 | - | C2H1g28692 | CX1g005267 | LOC_Os01g19770 | Os01g0303300 | - | Detail |
| C1H1g06976 | 1:10,019,390-10,020,445 | + | C2H1g03869 | CX1g003424 | - | - | - | Detail |
| C1H1g10454 | 1:10,027,886-10,030,734 | - | C2H1g08897 | CX1g005002 | LOC_Os01g19800 | Os01g0303600 | - | Detail |
| C1H1g12064 | 1:10,041,283-10,042,718 | + | C2H1g15081 | CX1g007072 | LOC_Os01g19820 | Os01g0303800 | - | Detail |
| C1H1g07873 | 1:10,043,887-10,044,984 | - | C2H1g09569 | CX1g004233 | LOC_Os01g19840 | Os01g0304000 | - | Detail |
| C1H1g30320 | 1:10,046,302-10,052,152 | - | C2H1g00615 | CX1g006405 | LOC_Os01g19850 | Os01g0304100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004422 | 1:5,259,813-5,263,252 | - | C1H1g22199 | C2H1g00003 | LOC_Os01g11150 | Os01g0209700 | GA2ox7 | Detail |
| CX1g004758 | 1:5,274,970-5,277,044 | - | C1H1g04985 | C2H1g04035 | LOC_Os01g11160 | Os01g0209800 | - | Detail |
| CX1g006209 | 1:5,283,182-5,283,353 | + | - | - | - | - | - | Detail |
| CX1g006771 | 1:5,287,260-5,288,920 | - | C1H1g26396 | C2H1g16459 | LOC_Os01g11200 | Os01g0210200 | - | Detail |
| CX1g001982 | 1:5,290,346-5,291,557 | + | C1H1g27615 | C2H1g10978 | LOC_Os01g11210 | Os01g0210300 | - | Detail |
| CX1g004173 | 1:5,291,834-5,293,957 | - | C1H1g05366 | C2H1g29549 | LOC_Os01g11220 | Os01g0210400 | OsTOD1 | Detail |
| CX1g001527 | 1:5,294,847-5,295,658 | - | C1H1g22960 | C2H1g12111 | LOC_Os01g11230 | Os01g0210500 | - | Detail |
| CX1g004127 | 1:5,298,536-5,299,036 | - | - | C2H1g23743 | LOC_Os01g11240 | Os01g0210600 | - | Detail |
| CX1g003904 | 1:5,303,489-5,305,102 | + | - | - | - | - | - | Detail |
| CX1g004305 | 1:5,306,611-5,306,781 | + | - | - | - | - | - | Detail |
| CX1g000720 | 1:5,308,155-5,310,443 | + | - | - | - | - | - | Detail |
| CX1g002610 | 1:5,309,248-5,313,113 | - | C1H1g12886 | C2H1g05349 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| CX1g004526 | 1:5,316,480-5,320,681 | + | C1H1g30027 | C2H1g07302 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| CX1g006413 | 1:5,381,547-5,393,635 | + | C1H1g25024 | C2H1g30364 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| CX1g004990 | 1:5,402,080-5,407,002 | + | C1H1g24516 | C2H1g07400 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| CX1g007192 | 1:5,407,844-5,409,568 | - | C1H1g10197 | C2H1g07852 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| CX1g006430 | 1:5,420,747-5,420,992 | - | - | - | - | - | - | Detail |
| CX1g000251 | 1:5,448,257-5,450,074 | + | - | C2H1g03845 | LOC_Os01g11510 | Os01g0213300 | - | Detail |
| CX1g001182 | 1:5,456,522-5,457,226 | - | C1H1g26340 | C2H1g20281 | LOC_Os01g11520 | Os01g0213400 | - | Detail |
| CX1g004394 | 1:5,472,691-5,474,076 | - | C1H1g28036 | C2H1g27187 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |