| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g10011 | 1:5,088,615-5,090,934 | + | C2H1g13509 | CX1g000819 | LOC_Os01g10820 | Os01g0205500 | - | Detail |
| C1H1g14161 | 1:5,092,774-5,096,953 | - | C2H1g23870 | CX1g005006 | LOC_Os01g10840 | Os01g0205700 | OsGSK1 | Detail |
| C1H1g29186 | 1:5,108,007-5,109,563 | + | C2H1g26064 | CX1g004213 | LOC_Os01g10850 | Os01g0205900 | - | Detail |
| C1H1g14349 | 1:5,114,157-5,116,663 | - | C2H1g07122 | CX1g004112 | LOC_Os01g10860 | Os01g0206200 | - | Detail |
| C1H1g26102 | 1:5,123,712-5,124,019 | + | C2H1g26046 | CX1g000067 | LOC_Os01g10880 | Os01g0206600 | - | Detail |
| C1H1g13675 | 1:5,130,888-5,134,524 | - | C2H1g21997 | CX1g006766 | LOC_Os01g10900 | Os01g0206800 | - | Detail |
| C1H1g27430 | 1:5,134,360-5,134,779 | + | C2H1g22901 | - | - | Os01g0207001 | - | Detail |
| C1H1g29711 | 1:5,137,480-5,139,285 | - | C2H1g18153 | CX1g005481 | LOC_Os01g10920 | Os01g0207200 | - | Detail |
| C1H1g26757 | 1:5,139,927-5,141,783 | - | C2H1g15053 | CX1g005600 | LOC_Os01g10930 | Os01g0207200 | - | Detail |
| C1H1g01947 | 1:5,149,302-5,151,140 | - | C2H1g00526 | CX1g002931 | LOC_Os01g10960 | Os01g0207600 | - | Detail |
| C1H1g18999 | 1:5,152,259-5,153,051 | + | C2H1g21950 | CX1g000352 | LOC_Os01g10970 | Os01g0207900 | - | Detail |
| C1H1g20276 | 1:5,155,792-5,156,539 | + | C2H1g18529 | CX1g000352 | LOC_Os01g10970 | Os01g0207700 | - | Detail |
| C1H1g25528 | 1:5,163,053-5,163,676 | + | - | - | - | - | - | Detail |
| C1H1g26781 | 1:5,164,019-5,165,466 | + | C2H1g21935 | CX1g000352 | LOC_Os01g10980 | Os01g0207900 | - | Detail |
| C1H1g25464 | 1:5,170,032-5,171,583 | + | C2H1g29674 | CX1g005883 | LOC_Os01g10990 | Os01g0208000 | - | Detail |
| C1H1g11853 | 1:5,180,501-5,182,286 | + | C2H1g12071 | CX1g000352 | LOC_Os01g10970 | Os01g0207900 | - | Detail |
| C1H1g28948 | 1:5,200,833-5,208,588 | + | C2H1g19708 | CX1g005878 | LOC_Os01g11040 | Os01g0208600 | - | Detail |
| C1H1g05716 | 1:5,209,967-5,214,728 | + | C2H1g22516 | CX1g006828 | LOC_Os01g11054 | Os01g0208700 | Osppc4 | Detail |
| C1H1g21624 | 1:5,215,206-5,220,318 | + | C2H1g01505 | CX1g004331 | LOC_Os01g11070 | Os01g0209000 | - | Detail |
| C1H1g24219 | 1:5,225,098-5,228,141 | + | C2H1g10245 | CX1g001114 | LOC_Os01g11110 | Os01g0209200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004422 | 1:5,259,813-5,263,252 | - | C1H1g22199 | C2H1g00003 | LOC_Os01g11150 | Os01g0209700 | GA2ox7 | Detail |
| CX1g004758 | 1:5,274,970-5,277,044 | - | C1H1g04985 | C2H1g04035 | LOC_Os01g11160 | Os01g0209800 | - | Detail |
| CX1g006209 | 1:5,283,182-5,283,353 | + | - | - | - | - | - | Detail |
| CX1g006771 | 1:5,287,260-5,288,920 | - | C1H1g26396 | C2H1g16459 | LOC_Os01g11200 | Os01g0210200 | - | Detail |
| CX1g001982 | 1:5,290,346-5,291,557 | + | C1H1g27615 | C2H1g10978 | LOC_Os01g11210 | Os01g0210300 | - | Detail |
| CX1g004173 | 1:5,291,834-5,293,957 | - | C1H1g05366 | C2H1g29549 | LOC_Os01g11220 | Os01g0210400 | OsTOD1 | Detail |
| CX1g001527 | 1:5,294,847-5,295,658 | - | C1H1g22960 | C2H1g12111 | LOC_Os01g11230 | Os01g0210500 | - | Detail |
| CX1g004127 | 1:5,298,536-5,299,036 | - | - | C2H1g23743 | LOC_Os01g11240 | Os01g0210600 | - | Detail |
| CX1g003904 | 1:5,303,489-5,305,102 | + | - | - | - | - | - | Detail |
| CX1g004305 | 1:5,306,611-5,306,781 | + | - | - | - | - | - | Detail |
| CX1g000720 | 1:5,308,155-5,310,443 | + | - | - | - | - | - | Detail |
| CX1g002610 | 1:5,309,248-5,313,113 | - | C1H1g12886 | C2H1g05349 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| CX1g004526 | 1:5,316,480-5,320,681 | + | C1H1g30027 | C2H1g07302 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| CX1g006413 | 1:5,381,547-5,393,635 | + | C1H1g25024 | C2H1g30364 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| CX1g004990 | 1:5,402,080-5,407,002 | + | C1H1g24516 | C2H1g07400 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| CX1g007192 | 1:5,407,844-5,409,568 | - | C1H1g10197 | C2H1g07852 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| CX1g006430 | 1:5,420,747-5,420,992 | - | - | - | - | - | - | Detail |
| CX1g000251 | 1:5,448,257-5,450,074 | + | - | C2H1g03845 | LOC_Os01g11510 | Os01g0213300 | - | Detail |
| CX1g001182 | 1:5,456,522-5,457,226 | - | C1H1g26340 | C2H1g20281 | LOC_Os01g11520 | Os01g0213400 | - | Detail |
| CX1g004394 | 1:5,472,691-5,474,076 | - | C1H1g28036 | C2H1g27187 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |