| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g09579 | 1:3,570,739-3,571,429 | - | C2H1g16567 | - | LOC_Os01g08300 | Os01g0178300 | CDT3, OsCDT3 | Detail |
| C1H1g19644 | 1:3,572,965-3,575,327 | - | C2H1g05074 | CX1g003276 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| C1H1g13257 | 1:3,579,920-3,580,611 | - | C2H1g22659 | CX1g006768 | LOC_Os01g08320 | Os01g0178500 | OsIAA1 | Detail |
| C1H1g10164 | 1:3,593,509-3,597,282 | + | C2H1g00169 | CX1g004954 | LOC_Os01g08340 | Os01g0178700 | - | Detail |
| C1H1g01382 | 1:3,601,294-3,601,593 | - | C2H1g20461 | - | - | - | - | Detail |
| C1H1g05955 | 1:3,605,504-3,606,817 | - | C2H1g02703 | CX1g004634 | LOC_Os01g08380 | Os01g0179000 | - | Detail |
| C1H1g30989 | 1:3,614,516-3,618,904 | + | C2H1g07957 | CX1g003878 | LOC_Os01g08400 | Os01g0179200 | - | Detail |
| C1H1g00147 | 1:3,620,328-3,624,234 | + | C2H1g06451 | CX1g001124 | - | - | - | Detail |
| C1H1g14891 | 1:3,625,320-3,627,818 | + | C2H1g13456 | CX1g001347 | LOC_Os01g08410 | Os01g0179300 | - | Detail |
| C1H1g01282 | 1:3,628,896-3,642,156 | + | C2H1g18435 | CX1g003881 | LOC_Os01g08420 | Os01g0179400 | SSG4 | Detail |
| C1H1g03761 | 1:3,644,239-3,651,711 | + | C2H1g10454 | CX1g000976 | LOC_Os01g08430 | Os01g0179500 | - | Detail |
| C1H1g18226 | 1:3,656,227-3,657,669 | - | C2H1g20314 | CX1g000280 | LOC_Os01g08440 | Os01g0179600 | - | Detail |
| C1H1g03506 | 1:3,663,306-3,677,262 | - | C2H1g29431 | CX1g000517 | LOC_Os01g08464 | Os01g0179700 | - | Detail |
| C1H1g12207 | 1:3,679,975-3,681,531 | - | C2H1g21560 | CX1g007079 | LOC_Os01g08470 | Os01g0180000 | - | Detail |
| C1H1g15413 | 1:3,695,289-3,700,112 | - | C2H1g01209 | CX1g004041 | LOC_Os01g08510 | Os01g0180300 | - | Detail |
| C1H1g03096 | 1:3,702,299-3,703,799 | - | C2H1g26851 | CX1g001675 | LOC_Os01g08520 | Os01g0180400 | - | Detail |
| C1H1g16576 | 1:3,718,337-3,719,292 | - | C2H1g11735 | - | - | Os01g0963300 | - | Detail |
| C1H1g30826 | 1:3,721,398-3,722,846 | - | C2H1g01950 | - | - | - | - | Detail |
| C1H1g26098 | 1:3,724,056-3,733,645 | - | C2H1g00248 | CX1g004464 | LOC_Os01g08540 | Os01g0180600 | OsMSH7 | Detail |
| C1H1g08568 | 1:3,737,083-3,741,342 | - | C2H1g21704 | CX1g000897 | LOC_Os01g08550 | Os01g0180700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004422 | 1:5,259,813-5,263,252 | - | C1H1g22199 | C2H1g00003 | LOC_Os01g11150 | Os01g0209700 | GA2ox7 | Detail |
| CX1g004758 | 1:5,274,970-5,277,044 | - | C1H1g04985 | C2H1g04035 | LOC_Os01g11160 | Os01g0209800 | - | Detail |
| CX1g006209 | 1:5,283,182-5,283,353 | + | - | - | - | - | - | Detail |
| CX1g006771 | 1:5,287,260-5,288,920 | - | C1H1g26396 | C2H1g16459 | LOC_Os01g11200 | Os01g0210200 | - | Detail |
| CX1g001982 | 1:5,290,346-5,291,557 | + | C1H1g27615 | C2H1g10978 | LOC_Os01g11210 | Os01g0210300 | - | Detail |
| CX1g004173 | 1:5,291,834-5,293,957 | - | C1H1g05366 | C2H1g29549 | LOC_Os01g11220 | Os01g0210400 | OsTOD1 | Detail |
| CX1g001527 | 1:5,294,847-5,295,658 | - | C1H1g22960 | C2H1g12111 | LOC_Os01g11230 | Os01g0210500 | - | Detail |
| CX1g004127 | 1:5,298,536-5,299,036 | - | - | C2H1g23743 | LOC_Os01g11240 | Os01g0210600 | - | Detail |
| CX1g003904 | 1:5,303,489-5,305,102 | + | - | - | - | - | - | Detail |
| CX1g004305 | 1:5,306,611-5,306,781 | + | - | - | - | - | - | Detail |
| CX1g000720 | 1:5,308,155-5,310,443 | + | - | - | - | - | - | Detail |
| CX1g002610 | 1:5,309,248-5,313,113 | - | C1H1g12886 | C2H1g05349 | LOC_Os01g11250 | Os01g0210700 | KAT2, OsKAT2 | Detail |
| CX1g004526 | 1:5,316,480-5,320,681 | + | C1H1g30027 | C2H1g07302 | LOC_Os01g11260 | Os01g0210800 | - | Detail |
| CX1g006413 | 1:5,381,547-5,393,635 | + | C1H1g25024 | C2H1g30364 | LOC_Os01g11370 | Os01g0212100 | - | Detail |
| CX1g004990 | 1:5,402,080-5,407,002 | + | C1H1g24516 | C2H1g07400 | LOC_Os01g11414 | Os01g0212400 | - | Detail |
| CX1g007192 | 1:5,407,844-5,409,568 | - | C1H1g10197 | C2H1g07852 | LOC_Os01g11430 | Os01g0212500 | OsTIE1 | Detail |
| CX1g006430 | 1:5,420,747-5,420,992 | - | - | - | - | - | - | Detail |
| CX1g000251 | 1:5,448,257-5,450,074 | + | - | C2H1g03845 | LOC_Os01g11510 | Os01g0213300 | - | Detail |
| CX1g001182 | 1:5,456,522-5,457,226 | - | C1H1g26340 | C2H1g20281 | LOC_Os01g11520 | Os01g0213400 | - | Detail |
| CX1g004394 | 1:5,472,691-5,474,076 | - | C1H1g28036 | C2H1g27187 | LOC_Os01g11550 | Os01g0213800 | OsPCF5, PCF5, OsTCP1, OsTCP1/PCF5 | Detail |