| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g25208 | 1:6,403,066-6,403,800 | + | C2H1g03678 | CX1g004766 | LOC_Os01g12920 | Os01g0229600 | - | Detail |
| C1H1g01831 | 1:6,404,958-6,411,641 | - | C2H1g05903 | CX1g005969 | LOC_Os01g12930 | Os01g0229700 | - | Detail |
| C1H1g16126 | 1:6,413,161-6,415,288 | - | C2H1g00149 | CX1g000942 | LOC_Os01g12940 | Os01g0229800 | - | Detail |
| C1H1g06612 | 1:6,426,065-6,432,993 | - | C2H1g27747 | CX1g006403 | LOC_Os01g13000 | Os01g0230200 | OsbHLH074 | Detail |
| C1H1g30420 | 1:6,462,134-6,466,386 | + | C2H1g20912 | CX1g006768 | LOC_Os01g13030 | Os01g0231000 | - | Detail |
| C1H1g30529 | 1:6,477,235-6,489,038 | + | C2H1g03048 | CX1g002350 | LOC_Os01g13060 | Os01g0231500 | - | Detail |
| C1H1g25386 | 1:6,494,015-6,495,624 | + | C2H1g22889 | CX1g004775 | LOC_Os01g13070 | Os01g0231600 | - | Detail |
| C1H1g25919 | 1:6,496,996-6,498,210 | - | C2H1g30242 | CX1g000758 | LOC_Os01g13080 | Os01g0231700 | OsP3B | Detail |
| C1H1g30419 | 1:6,499,339-6,503,412 | + | C2H1g07330 | CX1g004219 | LOC_Os01g13090 | Os01g0231800 | - | Detail |
| C1H1g05372 | 1:6,505,702-6,511,285 | + | C2H1g07330 | CX1g004219 | LOC_Os01g13100 | Os01g0231900 | - | Detail |
| C1H1g03374 | 1:6,514,896-6,515,732 | + | C2H1g24942 | CX1g004133 | LOC_Os01g13120 | Os01g0232000 | - | Detail |
| C1H1g10298 | 1:6,518,198-6,519,104 | + | C2H1g00821 | CX1g002510 | LOC_Os01g13130 | Os01g0232100 | - | Detail |
| C1H1g18430 | 1:6,540,883-6,547,998 | + | C2H1g00837 | CX1g004611 | LOC_Os01g13150 | Os01g0232300 | - | Detail |
| C1H1g14853 | 1:6,550,773-6,556,870 | + | C2H1g20763 | CX1g006088 | LOC_Os01g13160 | Os01g0232400 | - | Detail |
| C1H1g01258 | 1:6,558,328-6,562,659 | + | C2H1g26519 | CX1g001297 | LOC_Os01g13170 | Os01g0232500 | - | Detail |
| C1H1g25590 | 1:6,563,406-6,564,470 | - | C2H1g16363 | - | LOC_Os01g13180 | Os05g0233000 | - | Detail |
| C1H1g07412 | 1:6,566,414-6,569,542 | + | C2H1g27473 | CX1g001919 | LOC_Os01g13190 | Os01g0232700 | - | Detail |
| C1H1g27448 | 1:6,570,042-6,575,538 | - | C2H1g30141 | CX1g005183 | LOC_Os01g13200 | Os01g0232800 | - | Detail |
| C1H1g06424 | 1:6,582,733-6,585,050 | - | C2H1g11338 | CX1g001448 | LOC_Os01g13210 | Os01g0233000 | - | Detail |
| C1H1g14675 | 1:6,589,365-6,591,333 | - | C2H1g26592 | CX1g002029 | LOC_Os01g13260 | Os01g0233100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006987 | 1:4,765,008-4,767,612 | - | C1H1g26995 | C2H1g11537 | LOC_Os01g10290 | Os01g0200000 | - | Detail |
| CX1g003266 | 1:4,778,278-4,778,790 | + | C1H1g07163 | C2H1g04474 | LOC_Os01g10310 | Os01g0200200 | - | Detail |
| CX1g001960 | 1:4,781,046-4,785,758 | - | C1H1g07309 | C2H1g25742 | LOC_Os01g10320 | Os01g0200300 | OsHB5 | Detail |
| CX1g004279 | 1:4,789,889-4,796,499 | - | C1H1g18253 | C2H1g13754 | LOC_Os01g10340 | Os01g0200400 | - | Detail |
| CX1g005266 | 1:4,796,820-4,799,724 | + | C1H1g19440 | C2H1g05709 | LOC_Os01g10350 | Os01g0200500 | - | Detail |
| CX1g001261 | 1:4,807,494-4,808,363 | - | C1H1g08378 | C2H1g21530 | LOC_Os01g10370 | Os01g0200600 | - | Detail |
| CX1g001606 | 1:4,808,626-4,808,874 | + | - | - | - | - | - | Detail |
| CX1g000013 | 1:4,826,286-4,832,034 | + | C1H1g30875 | C2H1g28750 | LOC_Os01g10430 | Os01g0201000 | - | Detail |
| CX1g006358 | 1:4,840,837-4,842,481 | + | C1H1g18217 | C2H1g28750 | LOC_Os01g10440 | Os01g0201100 | - | Detail |
| CX1g000033 | 1:4,844,234-4,846,435 | - | C1H1g30064 | C2H1g25446 | LOC_Os01g10450 | Os01g0201200 | - | Detail |
| CX1g006703 | 1:4,851,482-4,851,706 | - | - | C2H1g26595 | - | - | - | Detail |
| CX1g002489 | 1:4,863,838-4,864,473 | - | - | C2H1g20579 | - | Os01g0201250 | - | Detail |
| CX1g004892 | 1:4,863,959-4,864,516 | + | - | - | LOC_Os01g10460 | Os01g0201275 | - | Detail |
| CX1g004123 | 1:4,868,479-4,868,649 | - | - | - | - | - | - | Detail |
| CX1g002514 | 1:4,871,983-4,872,162 | - | - | - | - | - | - | Detail |
| CX1g000926 | 1:4,873,552-4,873,995 | - | - | C2H1g12275 | LOC_Os01g10470 | Os01g0201400 | OsRALF17 | Detail |
| CX1g002271 | 1:4,876,766-4,877,651 | - | C1H1g16523 | C2H1g03634 | LOC_Os01g10480 | Os01g0201500 | - | Detail |
| CX1g003008 | 1:4,882,958-4,884,049 | - | C1H1g23585 | C2H1g24699 | LOC_Os01g10490 | Os01g0201600 | OsGAE1 | Detail |
| CX1g000858 | 1:4,889,955-4,890,119 | - | - | - | - | - | - | Detail |
| CX1g006928 | 1:4,893,559-4,902,077 | - | C1H1g15606 | C2H1g12459 | LOC_Os01g10504 | Os01g0201700 | RAG, MADS3, OsMADS3, OsMADS3(t), RMADS222, RAG1 | Detail |