| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g12932 | 4:2,236,477-2,239,577 | + | C1H4g03654 | CX4g033991 | LOC_Os04g05560 | Os04g0141400 | - | Detail |
| C2H4g05331 | 4:2,248,886-2,253,220 | + | C1H4g03587 | CX4g032104 | LOC_Os04g05580 | Os04g0141400 | - | Detail |
| C2H4g20001 | 4:2,277,414-2,292,003 | + | C1H4g20211 | CX4g036649 | LOC_Os04g06900 | Os04g0141800 | - | Detail |
| C2H4g11216 | 4:2,318,690-2,320,540 | - | C1H4g12610 | CX4g034548 | LOC_Os04g05650 | Os04g0142400 | - | Detail |
| C2H4g06474 | 4:2,343,385-2,343,874 | + | - | - | - | Os04g0142850 | - | Detail |
| C2H4g16625 | 4:2,358,454-2,359,318 | - | - | - | - | - | - | Detail |
| C2H4g26720 | 4:2,563,084-2,568,686 | - | C1H4g30135 | CX4g032438 | LOC_Os07g11150 | Os04g0610000 | - | Detail |
| C2H4g02934 | 4:2,772,724-2,778,332 | - | C1H4g30135 | CX4g032438 | LOC_Os07g11150 | Os04g0610000 | - | Detail |
| C2H4g09866 | 4:2,810,670-2,814,860 | + | C1H4g23976 | CX4g032274 | LOC_Os04g06840 | Os04g0152400 | - | Detail |
| C2H4g04256 | 4:2,849,465-2,851,714 | - | C1H4g00711 | CX4g033962 | LOC_Os04g06500 | Os04g0147200 | - | Detail |
| C2H4g22457 | 4:2,889,390-2,890,628 | - | C1H4g12610 | CX4g034548 | LOC_Os04g06520 | Os04g0149400 | - | Detail |
| C2H4g30478 | 4:2,913,051-2,914,061 | - | - | - | - | - | - | Detail |
| C2H4g20212 | 4:2,918,908-2,920,460 | + | - | - | LOC_Os04g06734 | - | - | Detail |
| C2H4g16574 | 4:2,923,216-2,923,784 | + | C1H4g02050 | CX4g033175 | LOC_Os04g06734 | Os04g0151700 | - | Detail |
| C2H4g07739 | 4:2,923,781-2,924,872 | - | C1H4g04023 | CX4g031514 | LOC_Os01g57250 | Os04g0297800 | - | Detail |
| C2H4g29954 | 4:2,927,594-2,928,514 | + | C1H4g02050 | CX4g033175 | LOC_Os04g06734 | Os04g0151700 | - | Detail |
| C2H4g22772 | 4:2,936,407-2,944,063 | - | C1H4g03885 | CX4g033821 | LOC_Os04g06770 | Os04g0151800 | - | Detail |
| C2H4g29394 | 4:2,957,216-2,963,253 | - | C1H4g04643 | CX4g031659 | LOC_Os04g06790 | Os04g0151900 | - | Detail |
| C2H4g26389 | 4:2,972,201-2,973,626 | + | C1H10g13343 | - | LOC_Os03g39655 | Os04g0331650 | - | Detail |
| C2H4g19138 | 4:2,976,203-2,976,707 | + | C1H4g13377 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g006086 | 1:4,600,155-4,600,367 | + | - | - | LOC_Os01g10030 | Os01g0196800 | - | Detail |
| CX1g004524 | 1:4,606,290-4,613,540 | + | C1H1g14618 | C2H1g28373 | LOC_Os01g10040 | Os01g0197100 | D2, D2b, CYP90D2/D2, d2, dwf2, CYP90D2, D2/CYP90D2, OsD2 | Detail |
| CX1g005780 | 1:4,615,296-4,620,496 | - | C1H1g20387 | C2H1g18174 | LOC_Os01g10050 | Os01g0197200 | - | Detail |
| CX1g005103 | 1:4,623,273-4,623,710 | + | - | C2H1g08298 | LOC_Os01g10070 | Os01g0197350 | - | Detail |
| CX1g005121 | 1:4,624,971-4,627,371 | + | C1H1g24747 | C2H1g17197 | LOC_Os01g10080 | Os01g0197400 | - | Detail |
| CX1g004435 | 1:4,627,825-4,629,738 | - | C1H1g01247 | C2H1g01272 | LOC_Os01g10090 | Os01g0197450 | - | Detail |
| CX1g002532 | 1:4,630,570-4,632,744 | - | C1H1g23699 | C2H1g12602 | LOC_Os01g10100 | Os01g0197500 | - | Detail |
| CX1g000181 | 1:4,638,471-4,642,911 | - | C1H1g02388 | C2H1g29964 | LOC_Os01g10110 | Os01g0197700 | Gn1a, OsCKX2 | Detail |
| CX1g006545 | 1:4,645,423-4,645,584 | - | - | - | - | - | - | Detail |
| CX1g005700 | 1:4,650,287-4,650,436 | - | - | - | - | - | - | Detail |
| CX1g006534 | 1:4,652,633-4,683,216 | - | C1H1g16458 | C2H1g14250 | LOC_Os01g10140 | Os01g0198000 | OsRDR4 | Detail |
| CX1g002313 | 1:4,687,542-4,687,691 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g001693 | 1:4,689,234-4,695,451 | - | C1H1g16973 | C2H1g26620 | LOC_Os01g10150 | Os01g0198200 | - | Detail |
| CX1g002926 | 1:4,706,098-4,707,832 | - | C1H1g29548 | C2H1g23718 | LOC_Os01g10180 | Os01g0198500 | - | Detail |
| CX1g000304 | 1:4,727,574-4,728,224 | + | - | C2H1g20955 | LOC_Os01g10210 | Os01g0198900 | - | Detail |
| CX1g000572 | 1:4,737,387-4,737,986 | + | - | C2H1g09712 | LOC_Os01g10230 | Os01g0199300 | - | Detail |
| CX1g006691 | 1:4,741,559-4,745,829 | - | C1H1g25179 | C2H1g26709 | LOC_Os01g10250 | Os01g0199400 | - | Detail |
| CX1g002814 | 1:4,749,275-4,750,059 | + | C1H1g11604 | - | - | - | - | Detail |
| CX1g002407 | 1:4,752,370-4,752,954 | - | C1H1g07163 | C2H1g26843 | LOC_Os01g10260 | Os01g0199700 | - | Detail |
| CX1g001007 | 1:4,757,168-4,763,387 | + | C1H1g01459 | C2H1g21983 | LOC_Os01g10280 | Os01g0199900 | - | Detail |