| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g13669 | 5:7,463,795-7,468,267 | - | C2H5g10863 | CX5g039794 | LOC_Os05g16230 | Os05g0251200 | - | Detail |
| C1H5g11478 | 5:7,471,901-7,473,157 | - | C2H5g12394 | CX5g039447 | LOC_Os05g16240 | Os05g0251200 | - | Detail |
| C1H5g13415 | 5:7,474,950-7,479,303 | + | C2H5g03213 | CX5g038303 | LOC_Os05g16250 | Os05g0251400 | OsBVF1, P31<sup>comet</sup> | Detail |
| C1H5g25482 | 5:7,481,388-7,484,201 | + | C2H5g18069 | CX5g038303 | - | Os05g0251500 | - | Detail |
| C1H5g22880 | 5:7,487,995-7,491,891 | + | C2H5g11253 | CX5g037603 | - | - | - | Detail |
| C1H5g03577 | 5:7,489,093-7,494,918 | - | C2H5g17103 | CX5g040268 | LOC_Os05g16280 | Os05g0251900 | - | Detail |
| C1H5g13508 | 5:7,497,940-7,502,969 | - | C2H5g24772 | CX5g041044 | LOC_Os05g16290 | Os05g0252000 | - | Detail |
| C1H5g26814 | 5:7,514,364-7,516,023 | - | C2H5g01822 | CX5g037929 | LOC_Os05g16300 | Os05g0252100 | - | Detail |
| C1H5g13165 | 5:7,560,818-7,561,289 | + | C2H5g15484 | CX5g039636 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g26412 | 5:7,633,753-7,637,377 | + | C2H5g01726 | CX5g040627 | LOC_Os05g16630 | Os05g0255600 | - | Detail |
| C1H5g13724 | 5:7,640,895-7,645,875 | + | C2H5g24880 | CX5g040616 | LOC_Os05g16640 | Os05g0255800 | - | Detail |
| C1H5g15674 | 5:7,650,875-7,656,493 | + | C2H5g00655 | CX5g039252 | LOC_Os05g16660 | Os05g0256000 | - | Detail |
| C1H5g11784 | 5:7,669,303-7,680,295 | + | C2H5g00991 | CX5g038401 | LOC_Os05g16430 | Os05g0256100 | - | Detail |
| C1H5g15820 | 5:7,730,571-7,741,013 | + | C2H5g02628 | CX5g040531 | LOC_Os05g16430 | Os05g0256500 | - | Detail |
| C1H5g24182 | 5:7,766,659-7,776,349 | + | C2H5g15704 | CX5g039056 | LOC_Os05g16430 | Os05g0257100 | - | Detail |
| C1H5g28432 | 5:7,780,957-7,781,515 | + | C2H5g05784 | CX3g030223 | - | - | - | Detail |
| C1H5g26063 | 5:7,817,075-7,823,465 | + | C2H5g12556 | CX5g036934 | LOC_Os05g16420 | Os05g0253200 | - | Detail |
| C1H5g03004 | 5:7,845,727-7,846,645 | + | C2H5g12556 | CX5g038401 | - | Os05g0261700 | - | Detail |
| C1H5g04336 | 5:7,847,001-7,848,449 | + | C2H5g07983 | CX5g036934 | LOC_Os05g16670 | Os05g0263100 | - | Detail |
| C1H5g16401 | 5:7,855,230-7,860,196 | + | C2H5g15568 | CX5g038074 | LOC_Os05g16740 | Os05g0263100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX10g009146 | 10:15,289,835-15,290,044 | - | - | - | - | - | - | Detail |
| CX10g010642 | 10:15,292,201-15,324,484 | - | C1H10g01752 | C2H10g03620 | LOC_Os10g31864 | Os10g0456900 | - | Detail |
| CX10g009936 | 10:15,326,861-15,332,268 | + | C1H10g28142 | C2H10g25978 | LOC_Os10g31900 | Os10g0457000 | - | Detail |
| CX10g008983 | 10:15,333,225-15,338,770 | - | C1H10g02421 | C2H10g24061 | LOC_Os10g31910 | Os10g0457200 | DEL1 | Detail |
| CX10g010532 | 10:15,344,480-15,346,273 | + | C1H10g09269 | C2H10g11587 | LOC_Os10g31930 | Os10g0457400 | - | Detail |
| CX10g009774 | 10:15,346,766-15,349,178 | - | C1H10g03592 | C2H10g13883 | LOC_Os10g31940 | Os10g0457500 | - | Detail |
| CX10g008016 | 10:15,354,227-15,358,078 | + | C1H10g24214 | C2H10g12371 | LOC_Os10g31950 | Os10g0457600 | - | Detail |
| CX10g008261 | 10:15,363,598-15,375,943 | + | C1H10g03063 | C2H10g02206 | LOC_Os10g31970 | Os10g0457700 | OsCHR717, CHR717 | Detail |
| CX10g009536 | 10:15,377,951-15,382,773 | - | C1H10g06463 | C2H10g11679 | LOC_Os10g32030 | - | - | Detail |
| CX10g009342 | 10:15,384,768-15,385,025 | - | - | C2H10g03034 | - | Os10g0465300 | - | Detail |
| CX10g010754 | 10:15,388,063-15,393,285 | + | C1H10g15449 | C2H10g01863 | LOC_Os10g32060 | Os10g0458700 | - | Detail |
| CX10g008914 | 10:15,399,575-15,401,107 | - | C1H10g22945 | C2H10g14384 | LOC_Os10g32080 | Os10g0458900 | - | Detail |
| CX10g008084 | 10:15,406,152-15,407,657 | - | C1H10g22945 | C2H10g10019 | LOC_Os10g32110 | Os10g0459300 | - | Detail |
| CX10g010119 | 10:15,421,272-15,423,044 | + | C1H10g22945 | C2H10g06860 | LOC_Os10g32160 | Os10g0459600 | - | Detail |
| CX10g009452 | 10:15,424,786-15,425,016 | + | - | C2H10g24376 | - | - | - | Detail |
| CX10g007662 | 10:15,426,852-15,428,720 | - | C1H10g22945 | C2H10g00819 | LOC_Os10g32170 | Os10g0459700 | - | Detail |
| CX10g010725 | 10:15,432,071-15,436,090 | + | C1H10g16024 | C2H10g20849 | LOC_Os10g32470 | Os10g0462300 | - | Detail |
| CX10g010195 | 10:15,446,236-15,446,403 | - | C1H4g20138 | - | - | - | - | Detail |
| CX10g009991 | 10:15,452,792-15,460,905 | + | C1H10g26551 | C2H10g22790 | LOC_Os10g32540 | Os10g0462800 | WSL3, OspTAC3, pTAC3 | Detail |
| CX10g009745 | 10:15,461,855-15,466,702 | + | C1H10g16202 | C2H10g17683 | LOC_Os10g32550 | Os10g0462900 | - | Detail |