| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g20105 | 4:6,705,266-6,705,853 | + | - | - | - | - | - | Detail |
| C2H4g20550 | 4:6,707,768-6,709,158 | + | C1H4g30629 | CX4g035112 | LOC_Os04g13140 | Os04g0208200 | - | Detail |
| C2H4g17798 | 4:6,710,843-6,712,726 | - | C1H4g15636 | CX4g033448 | LOC_Os04g13150 | Os04g0208400 | BRT1, OsFBX125 | Detail |
| C2H4g01739 | 4:6,716,088-6,717,840 | - | C1H4g07664 | CX4g032433 | LOC_Os04g13160 | Os04g0208500 | - | Detail |
| C2H4g10339 | 4:6,720,625-6,722,435 | - | C1H4g06544 | CX4g035372 | LOC_Os04g13170 | Os04g0208600 | - | Detail |
| C2H4g00571 | 4:6,758,074-6,769,349 | - | C1H4g10533 | CX4g033845 | LOC_Os04g13210 | Os04g0209200 | OsABCC9 | Detail |
| C2H4g15555 | 4:6,777,720-6,785,840 | - | C1H4g24328 | CX4g033865 | LOC_Os04g13220 | Os04g0209300 | - | Detail |
| C2H4g02817 | 4:6,812,996-6,816,312 | + | - | - | LOC_Os04g13260 | - | - | Detail |
| C2H4g04516 | 4:6,832,978-6,833,205 | + | C1H4g07264 | - | - | - | - | Detail |
| C2H4g06684 | 4:6,872,076-6,875,130 | + | C1H4g15372 | CX4g033836 | LOC_Os04g13364 | Os04g0210700 | - | Detail |
| C2H4g07997 | 4:6,903,171-6,904,403 | - | C1H4g21611 | CX4g034363 | LOC_Os04g13460 | Os04g0211900 | - | Detail |
| C2H4g28740 | 4:6,914,362-6,928,209 | + | C1H4g12804 | CX4g033200 | LOC_Os04g13470 | Os04g0212200 | - | Detail |
| C2H4g27029 | 4:6,931,932-6,932,470 | + | C1H4g25525 | CX4g033217 | LOC_Os04g13480 | Os04g0212450 | - | Detail |
| C2H4g27586 | 4:6,978,065-6,979,670 | + | C1H4g04473 | CX4g031980 | LOC_Os04g13530 | Os04g0212700 | - | Detail |
| C2H4g09067 | 4:7,034,258-7,036,783 | + | C1H4g27274 | CX4g035833 | LOC_Os04g13590 | Os04g0152400 | - | Detail |
| C2H4g24663 | 4:7,159,216-7,159,786 | + | - | CX4g033913 | - | Os04g0217500 | - | Detail |
| C2H4g12846 | 4:7,166,902-7,231,033 | + | C1H4g24799 | CX4g036380 | LOC_Os04g14130 | Os04g0218100 | - | Detail |
| C2H4g05575 | 4:7,186,077-7,192,112 | - | C1H4g17468 | CX4g033439 | LOC_Os04g14190 | Os04g0218900 | - | Detail |
| C2H4g11659 | 4:7,248,263-7,252,104 | - | - | CX4g035219 | LOC_Os04g12730 | Os04g0272500 | - | Detail |
| C2H4g23433 | 4:7,272,898-7,282,635 | + | C1H4g15248 | CX4g032084 | LOC_Os04g14304 | Os04g0220300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005975 | 1:4,399,253-4,400,499 | + | C1H1g27970 | C2H1g05843 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| CX1g003550 | 1:4,401,043-4,402,909 | - | C1H1g11468 | C2H1g21862 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| CX1g000614 | 1:4,404,573-4,408,077 | - | C1H1g10688 | C2H1g17174 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| CX1g006629 | 1:4,412,119-4,418,885 | + | C1H1g13152 | C2H1g04548 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| CX1g002400 | 1:4,419,653-4,422,938 | - | C1H1g06151 | C2H1g08327 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| CX1g002438 | 1:4,428,357-4,428,530 | + | - | - | - | - | - | Detail |
| CX1g001862 | 1:4,432,457-4,432,636 | + | - | - | - | - | - | Detail |
| CX1g002653 | 1:4,433,707-4,435,874 | - | C1H1g16281 | C2H1g05163 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| CX1g005297 | 1:4,437,032-4,437,187 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000713 | 1:4,441,147-4,445,374 | - | C1H1g29130 | C2H1g20037 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| CX1g000442 | 1:4,458,075-4,458,455 | + | - | C2H1g05731 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| CX1g005498 | 1:4,468,383-4,470,021 | + | C1H1g00947 | C2H1g26832 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| CX1g000509 | 1:4,478,732-4,484,653 | - | C1H1g03034 | C2H1g03615 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| CX1g001794 | 1:4,496,357-4,496,833 | - | C1H1g10561 | C2H1g17887 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| CX1g003898 | 1:4,500,904-4,501,767 | - | C1H1g31641 | C2H1g30117 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| CX1g000703 | 1:4,508,201-4,510,301 | - | C1H1g28666 | C2H1g28884 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| CX1g000750 | 1:4,514,029-4,514,238 | - | - | - | - | - | - | Detail |
| CX1g006997 | 1:4,559,561-4,561,268 | + | C1H1g18771 | C2H1g19303 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| CX1g000104 | 1:4,575,690-4,576,289 | - | - | C2H1g22870 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| CX1g005979 | 1:4,579,176-4,580,606 | + | C1H1g05499 | C2H1g12871 | LOC_Os01g10020 | Os01g0196600 | - | Detail |