| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g01936 | 3:18,769,849-18,770,589 | - | C1H3g06313 | CX3g026822 | LOC_Os03g36650 | Os03g0564600 | - | Detail |
| C2H3g24254 | 3:18,798,461-18,799,456 | - | C1H3g28639 | CX3g030746 | LOC_Os03g36730 | Os03g0565100 | - | Detail |
| C2H3g16341 | 3:18,812,999-18,820,150 | + | C1H3g02915 | CX3g030180 | LOC_Os03g36750 | Os03g0565200 | - | Detail |
| C2H3g09325 | 3:18,822,889-18,827,425 | + | C1H3g22618 | CX3g025334 | LOC_Os03g36760 | Os03g0565300 | - | Detail |
| C2H3g16767 | 3:18,836,422-18,851,133 | + | C1H3g29496 | CX3g030739 | LOC_Os03g36780 | Os03g0565500 | - | Detail |
| C2H3g12114 | 3:18,854,343-18,859,940 | - | C1H3g13363 | CX3g029595 | LOC_Os03g36790 | Os03g0565600 | - | Detail |
| C2H3g20304 | 3:18,869,325-18,872,133 | - | C1H3g22145 | CX3g027738 | LOC_Os03g36830 | Os03g0565900 | - | Detail |
| C2H3g02382 | 3:18,901,233-18,905,222 | - | C1H3g03992 | CX3g027468 | LOC_Os03g36900 | Os03g0566500 | - | Detail |
| C2H3g13499 | 3:18,909,738-18,912,065 | + | C1H3g30925 | CX3g026657 | LOC_Os03g36910 | Os03g0566600 | - | Detail |
| C2H3g26454 | 3:18,912,799-18,916,071 | - | C1H3g18058 | CX3g025200 | LOC_Os03g36920 | Os03g0566700 | - | Detail |
| C2H3g29578 | 3:18,917,243-18,921,727 | - | C1H3g23101 | CX3g027874 | LOC_Os03g36930 | Os03g0566800 | OsRH34 | Detail |
| C2H3g07333 | 3:18,939,378-18,943,165 | - | C1H3g16061 | CX3g026662 | LOC_Os03g37010 | Os03g0567600 | - | Detail |
| C2H3g10852 | 3:18,958,051-18,961,075 | + | C1H3g23205 | CX3g029436 | LOC_Os03g37070 | Os03g0850200 | - | Detail |
| C2H3g20404 | 3:18,965,339-18,967,301 | + | C1H3g08263 | CX3g025716 | LOC_Os03g37080 | Os03g0568400 | - | Detail |
| C2H3g17716 | 3:18,967,920-18,970,629 | - | C1H3g01309 | CX3g029847 | LOC_Os03g37090 | Os03g0568500 | - | Detail |
| C2H3g18006 | 3:18,973,715-18,975,205 | + | C1H3g18739 | CX3g026252 | LOC_Os03g37100 | Os03g0568600 | - | Detail |
| C2H3g16322 | 3:18,980,226-18,982,859 | + | C1H3g05688 | CX3g027192 | LOC_Os03g37120 | Os03g0568800 | - | Detail |
| C2H3g06254 | 3:18,983,206-18,988,369 | - | C1H3g03504 | CX3g029489 | LOC_Os03g37130 | Os03g0568900 | - | Detail |
| C2H3g17441 | 3:18,997,158-19,001,482 | - | C1H3g26605 | CX3g025311 | LOC_Os03g37140 | Os03g0569000 | - | Detail |
| C2H3g20952 | 3:19,017,161-19,018,262 | - | C1H3g17254 | CX3g030124 | LOC_Os03g37250 | Os03g0371800 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005975 | 1:4,399,253-4,400,499 | + | C1H1g27970 | C2H1g05843 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| CX1g003550 | 1:4,401,043-4,402,909 | - | C1H1g11468 | C2H1g21862 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| CX1g000614 | 1:4,404,573-4,408,077 | - | C1H1g10688 | C2H1g17174 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| CX1g006629 | 1:4,412,119-4,418,885 | + | C1H1g13152 | C2H1g04548 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| CX1g002400 | 1:4,419,653-4,422,938 | - | C1H1g06151 | C2H1g08327 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| CX1g002438 | 1:4,428,357-4,428,530 | + | - | - | - | - | - | Detail |
| CX1g001862 | 1:4,432,457-4,432,636 | + | - | - | - | - | - | Detail |
| CX1g002653 | 1:4,433,707-4,435,874 | - | C1H1g16281 | C2H1g05163 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| CX1g005297 | 1:4,437,032-4,437,187 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000713 | 1:4,441,147-4,445,374 | - | C1H1g29130 | C2H1g20037 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| CX1g000442 | 1:4,458,075-4,458,455 | + | - | C2H1g05731 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| CX1g005498 | 1:4,468,383-4,470,021 | + | C1H1g00947 | C2H1g26832 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| CX1g000509 | 1:4,478,732-4,484,653 | - | C1H1g03034 | C2H1g03615 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| CX1g001794 | 1:4,496,357-4,496,833 | - | C1H1g10561 | C2H1g17887 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| CX1g003898 | 1:4,500,904-4,501,767 | - | C1H1g31641 | C2H1g30117 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| CX1g000703 | 1:4,508,201-4,510,301 | - | C1H1g28666 | C2H1g28884 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| CX1g000750 | 1:4,514,029-4,514,238 | - | - | - | - | - | - | Detail |
| CX1g006997 | 1:4,559,561-4,561,268 | + | C1H1g18771 | C2H1g19303 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| CX1g000104 | 1:4,575,690-4,576,289 | - | - | C2H1g22870 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| CX1g005979 | 1:4,579,176-4,580,606 | + | C1H1g05499 | C2H1g12871 | LOC_Os01g10020 | Os01g0196600 | - | Detail |