| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g21969 | 3:24,130,274-24,134,441 | + | C2H3g28256 | CX3g025231 | LOC_Os03g45320 | Os03g0655700 | - | Detail |
| C1H3g09602 | 3:24,137,352-24,138,990 | - | C2H3g14608 | CX3g027791 | LOC_Os03g45330 | Os03g0656000 | - | Detail |
| C1H3g03391 | 3:24,140,801-24,141,106 | - | C2H3g05055 | CX3g027791 | LOC_Os03g45330 | - | - | Detail |
| C1H3g13910 | 3:24,144,281-24,145,265 | - | C2H3g02509 | CX3g027133 | LOC_Os03g45340 | Os03g0656100 | - | Detail |
| C1H3g27575 | 3:24,146,309-24,147,654 | - | C2H3g14304 | CX3g025575 | LOC_Os03g45344 | Os03g0656201 | - | Detail |
| C1H3g27714 | 3:24,163,247-24,164,185 | - | C2H3g22997 | - | - | - | - | Detail |
| C1H3g10858 | 3:24,164,237-24,164,845 | - | C2H3g22826 | - | - | - | - | Detail |
| C1H3g06767 | 3:24,175,131-24,177,657 | + | C2H3g19499 | CX3g026686 | LOC_Os03g45390 | Os03g0656800 | - | Detail |
| C1H3g05969 | 3:24,177,942-24,181,683 | + | C2H3g07189 | CX3g028225 | LOC_Os03g45400 | Os03g0656900 | NUS1, V1, V<sub>1</sub> | Detail |
| C1H3g09225 | 3:24,183,479-24,186,795 | + | C2H3g10811 | CX3g030227 | LOC_Os03g45410 | Os03g0657000 | OsTBP2 | Detail |
| C1H3g18850 | 3:24,187,560-24,190,685 | - | C2H3g07935 | CX3g030290 | LOC_Os03g45420 | Os03g0657100 | - | Detail |
| C1H3g02435 | 3:24,200,053-24,200,562 | - | C2H3g03419 | CX3g029382 | LOC_Os03g45450 | Os03g0657400 | - | Detail |
| C1H3g24167 | 3:24,219,075-24,225,655 | - | C2H3g22074 | CX3g028666 | LOC_Os03g45619 | Os03g0658800 | - | Detail |
| C1H3g12006 | 3:24,226,530-24,227,437 | - | C2H3g00755 | CX3g028666 | LOC_Os03g45519 | Os03g0658000 | - | Detail |
| C1H3g24128 | 3:24,228,324-24,229,535 | - | C2H3g27863 | - | LOC_Os03g45528 | Os03g0658000 | - | Detail |
| C1H3g08032 | 3:24,252,669-24,262,291 | - | C2H3g11605 | CX3g028381 | LOC_Os03g45619 | Os03g0658800 | - | Detail |
| C1H3g00885 | 3:24,296,970-24,297,413 | + | C2H3g00843 | CX3g029438 | LOC_Os03g45710 | Os03g0659200 | - | Detail |
| C1H3g09830 | 3:24,298,207-24,300,976 | - | C2H3g07162 | CX3g029511 | LOC_Os03g45720 | Os03g0659300 | - | Detail |
| C1H3g25241 | 3:24,302,054-24,307,297 | - | C2H3g28770 | CX3g026126 | LOC_Os03g45730 | Os03g0659400 | - | Detail |
| C1H3g21268 | 3:24,309,035-24,312,640 | + | - | CX3g030075 | LOC_Os03g56740 | Os04g0578900 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005975 | 1:4,399,253-4,400,499 | + | C1H1g27970 | C2H1g05843 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| CX1g003550 | 1:4,401,043-4,402,909 | - | C1H1g11468 | C2H1g21862 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| CX1g000614 | 1:4,404,573-4,408,077 | - | C1H1g10688 | C2H1g17174 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| CX1g006629 | 1:4,412,119-4,418,885 | + | C1H1g13152 | C2H1g04548 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| CX1g002400 | 1:4,419,653-4,422,938 | - | C1H1g06151 | C2H1g08327 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| CX1g002438 | 1:4,428,357-4,428,530 | + | - | - | - | - | - | Detail |
| CX1g001862 | 1:4,432,457-4,432,636 | + | - | - | - | - | - | Detail |
| CX1g002653 | 1:4,433,707-4,435,874 | - | C1H1g16281 | C2H1g05163 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| CX1g005297 | 1:4,437,032-4,437,187 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000713 | 1:4,441,147-4,445,374 | - | C1H1g29130 | C2H1g20037 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| CX1g000442 | 1:4,458,075-4,458,455 | + | - | C2H1g05731 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| CX1g005498 | 1:4,468,383-4,470,021 | + | C1H1g00947 | C2H1g26832 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| CX1g000509 | 1:4,478,732-4,484,653 | - | C1H1g03034 | C2H1g03615 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| CX1g001794 | 1:4,496,357-4,496,833 | - | C1H1g10561 | C2H1g17887 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| CX1g003898 | 1:4,500,904-4,501,767 | - | C1H1g31641 | C2H1g30117 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| CX1g000703 | 1:4,508,201-4,510,301 | - | C1H1g28666 | C2H1g28884 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| CX1g000750 | 1:4,514,029-4,514,238 | - | - | - | - | - | - | Detail |
| CX1g006997 | 1:4,559,561-4,561,268 | + | C1H1g18771 | C2H1g19303 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| CX1g000104 | 1:4,575,690-4,576,289 | - | - | C2H1g22870 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| CX1g005979 | 1:4,579,176-4,580,606 | + | C1H1g05499 | C2H1g12871 | LOC_Os01g10020 | Os01g0196600 | - | Detail |