| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g14139 | 3:1,196,798-1,202,229 | + | C2H3g00396 | CX3g026340 | LOC_Os03g03164 | Os03g0123500 | HOS66, HOS66S | Detail |
| C1H3g07667 | 3:1,203,310-1,206,470 | - | C2H3g00632 | CX3g027409 | LOC_Os03g03180 | Os03g0123600 | - | Detail |
| C1H3g01390 | 3:1,209,436-1,210,395 | - | C2H3g19198 | CX3g025593 | LOC_Os11g34910 | Os11g0550300 | - | Detail |
| C1H3g08918 | 3:1,214,219-1,216,013 | + | C2H3g13822 | CX3g025457 | LOC_Os03g03200 | Os03g0123800 | - | Detail |
| C1H3g08025 | 3:1,217,866-1,218,564 | + | C2H3g17363 | CX3g029809 | LOC_Os02g13020 | - | - | Detail |
| C1H3g22053 | 3:1,227,572-1,233,489 | + | C2H3g11416 | CX3g025586 | LOC_Os03g03260 | Os03g0124000 | OsHB22 | Detail |
| C1H3g12842 | 3:1,236,142-1,237,813 | + | C2H3g23812 | CX3g029945 | LOC_Os03g03270 | Os03g0124100 | - | Detail |
| C1H3g06423 | 3:1,239,734-1,242,415 | + | C2H3g17495 | CX3g029915 | LOC_Os03g03280 | Os03g0124200 | - | Detail |
| C1H3g21157 | 3:1,243,927-1,245,327 | + | C2H3g27072 | CX3g027531 | LOC_Os03g03290 | Os03g0124300 | - | Detail |
| C1H3g07613 | 3:1,252,329-1,253,207 | + | C2H3g24607 | CX3g026326 | LOC_Os03g03320 | Os03g0124500 | - | Detail |
| C1H3g04841 | 3:1,262,744-1,265,831 | + | C2H3g11584 | CX3g030707 | LOC_Os03g03350 | Os03g0124900 | OsPG1 | Detail |
| C1H3g23961 | 3:1,265,828-1,267,359 | - | C2H3g17248 | CX3g028338 | LOC_Os03g03360 | Os03g0125000 | - | Detail |
| C1H3g31110 | 3:1,268,721-1,271,134 | - | C2H3g15002 | CX3g029957 | LOC_Os03g03370 | Os03g0125100 | DSM2, OsBCH1, OsHYD3 | Detail |
| C1H3g17673 | 3:1,276,687-1,284,038 | + | C2H3g15732 | CX3g026725 | LOC_Os03g03390 | Os03g0125300 | - | Detail |
| C1H3g28194 | 3:1,288,411-1,292,930 | + | C2H3g14454 | CX3g029384 | LOC_Os03g03410 | Os03g0125600 | - | Detail |
| C1H3g27909 | 3:1,296,454-1,299,299 | - | C2H3g24007 | CX3g031344 | LOC_Os03g03420 | Os03g0125700 | - | Detail |
| C1H3g30116 | 3:1,307,476-1,313,029 | + | C2H3g15544 | CX3g029108 | LOC_Os03g03430 | Os03g0125800 | - | Detail |
| C1H3g10403 | 3:1,314,001-1,315,563 | + | C2H3g23265 | CX3g027007 | LOC_Os03g03440 | Os03g0125900 | - | Detail |
| C1H3g12126 | 3:1,315,772-1,320,424 | - | C2H3g03318 | CX3g030160 | LOC_Os03g03450 | Os03g0126000 | - | Detail |
| C1H3g18852 | 3:1,324,184-1,329,044 | - | C2H3g01117 | CX3g027762 | LOC_Os03g03460 | Os03g0126100 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005975 | 1:4,399,253-4,400,499 | + | C1H1g27970 | C2H1g05843 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| CX1g003550 | 1:4,401,043-4,402,909 | - | C1H1g11468 | C2H1g21862 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| CX1g000614 | 1:4,404,573-4,408,077 | - | C1H1g10688 | C2H1g17174 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| CX1g006629 | 1:4,412,119-4,418,885 | + | C1H1g13152 | C2H1g04548 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| CX1g002400 | 1:4,419,653-4,422,938 | - | C1H1g06151 | C2H1g08327 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| CX1g002438 | 1:4,428,357-4,428,530 | + | - | - | - | - | - | Detail |
| CX1g001862 | 1:4,432,457-4,432,636 | + | - | - | - | - | - | Detail |
| CX1g002653 | 1:4,433,707-4,435,874 | - | C1H1g16281 | C2H1g05163 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| CX1g005297 | 1:4,437,032-4,437,187 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000713 | 1:4,441,147-4,445,374 | - | C1H1g29130 | C2H1g20037 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| CX1g000442 | 1:4,458,075-4,458,455 | + | - | C2H1g05731 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| CX1g005498 | 1:4,468,383-4,470,021 | + | C1H1g00947 | C2H1g26832 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| CX1g000509 | 1:4,478,732-4,484,653 | - | C1H1g03034 | C2H1g03615 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| CX1g001794 | 1:4,496,357-4,496,833 | - | C1H1g10561 | C2H1g17887 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| CX1g003898 | 1:4,500,904-4,501,767 | - | C1H1g31641 | C2H1g30117 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| CX1g000703 | 1:4,508,201-4,510,301 | - | C1H1g28666 | C2H1g28884 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| CX1g000750 | 1:4,514,029-4,514,238 | - | - | - | - | - | - | Detail |
| CX1g006997 | 1:4,559,561-4,561,268 | + | C1H1g18771 | C2H1g19303 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| CX1g000104 | 1:4,575,690-4,576,289 | - | - | C2H1g22870 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| CX1g005979 | 1:4,579,176-4,580,606 | + | C1H1g05499 | C2H1g12871 | LOC_Os01g10020 | Os01g0196600 | - | Detail |