| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H11g10927 | 11:19,852,690-19,856,018 | - | C2H11g28823 | CX11g011145 | LOC_Os11g37980 | Os11g0592300 | - | Detail |
| C1H11g10256 | 11:19,856,134-19,856,367 | - | C2H11g28741 | - | LOC_Os11g37980 | - | - | Detail |
| C1H11g12114 | 11:19,860,871-19,866,915 | - | C2H11g30302 | CX11g011568 | LOC_Os11g37990 | Os11g0592400 | OsCFM3 | Detail |
| C1H11g12653 | 11:19,864,999-19,866,599 | + | - | - | - | Os11g0592375 | - | Detail |
| C1H11g10354 | 11:19,866,639-19,866,936 | + | - | - | - | - | - | Detail |
| C1H11g00826 | 11:19,871,205-19,874,495 | + | C2H11g04172 | CX11g013487 | LOC_Os11g38000 | Os11g0592500 | - | Detail |
| C1H11g00351 | 11:19,874,521-19,876,553 | + | C2H11g04172 | CX11g013487 | - | Os11g0242200 | - | Detail |
| C1H11g17785 | 11:19,881,342-19,881,866 | + | C2H11g11205 | CX11g014945 | - | - | - | Detail |
| C1H11g13401 | 11:19,887,867-19,891,481 | + | C2H11g20898 | CX11g014721 | LOC_Os11g38010 | Os11g0592600 | - | Detail |
| C1H11g06247 | 11:19,891,991-19,897,029 | + | C2H11g02481 | CX11g011495 | LOC_Os11g38020 | Os11g0592700 | - | Detail |
| C1H11g09697 | 11:19,897,500-19,901,302 | - | C2H11g13340 | CX11g014064 | LOC_Os11g38030 | Os11g0592800 | - | Detail |
| C1H11g22955 | 11:19,902,193-19,904,022 | - | C2H11g27401 | CX11g011167 | LOC_Os11g38040 | Os11g0592900 | - | Detail |
| C1H11g03477 | 11:19,906,230-19,910,786 | - | C2H11g20216 | CX11g011244 | LOC_Os11g38050 | Os11g0593000 | - | Detail |
| C1H11g21739 | 11:19,912,373-19,912,921 | + | - | - | - | - | - | Detail |
| C1H11g25206 | 11:19,922,380-19,923,819 | + | C2H11g03366 | CX11g014148 | LOC_Os11g38100 | Os11g0593500 | - | Detail |
| C1H11g30131 | 11:19,957,558-19,966,470 | - | C2H11g23010 | CX11g011997 | LOC_Os11g38360 | Os11g0598800 | - | Detail |
| C1H11g05059 | 11:19,965,697-19,969,163 | + | - | - | - | - | - | Detail |
| C1H11g28846 | 11:19,971,082-19,973,509 | + | C2H11g22099 | CX11g011700 | LOC_Os11g38130 | Os11g0593600 | - | Detail |
| C1H11g20961 | 11:19,981,622-19,984,402 | - | C2H11g16766 | CX11g011636 | LOC_Os11g38150 | Os11g0593900 | - | Detail |
| C1H11g18586 | 11:19,985,827-19,987,754 | + | C2H11g02804 | CX11g013825 | LOC_Os11g38160 | Os11g0594000 | OsSTP28 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005975 | 1:4,399,253-4,400,499 | + | C1H1g27970 | C2H1g05843 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| CX1g003550 | 1:4,401,043-4,402,909 | - | C1H1g11468 | C2H1g21862 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| CX1g000614 | 1:4,404,573-4,408,077 | - | C1H1g10688 | C2H1g17174 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| CX1g006629 | 1:4,412,119-4,418,885 | + | C1H1g13152 | C2H1g04548 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| CX1g002400 | 1:4,419,653-4,422,938 | - | C1H1g06151 | C2H1g08327 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| CX1g002438 | 1:4,428,357-4,428,530 | + | - | - | - | - | - | Detail |
| CX1g001862 | 1:4,432,457-4,432,636 | + | - | - | - | - | - | Detail |
| CX1g002653 | 1:4,433,707-4,435,874 | - | C1H1g16281 | C2H1g05163 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| CX1g005297 | 1:4,437,032-4,437,187 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000713 | 1:4,441,147-4,445,374 | - | C1H1g29130 | C2H1g20037 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| CX1g000442 | 1:4,458,075-4,458,455 | + | - | C2H1g05731 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| CX1g005498 | 1:4,468,383-4,470,021 | + | C1H1g00947 | C2H1g26832 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| CX1g000509 | 1:4,478,732-4,484,653 | - | C1H1g03034 | C2H1g03615 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| CX1g001794 | 1:4,496,357-4,496,833 | - | C1H1g10561 | C2H1g17887 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| CX1g003898 | 1:4,500,904-4,501,767 | - | C1H1g31641 | C2H1g30117 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| CX1g000703 | 1:4,508,201-4,510,301 | - | C1H1g28666 | C2H1g28884 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| CX1g000750 | 1:4,514,029-4,514,238 | - | - | - | - | - | - | Detail |
| CX1g006997 | 1:4,559,561-4,561,268 | + | C1H1g18771 | C2H1g19303 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| CX1g000104 | 1:4,575,690-4,576,289 | - | - | C2H1g22870 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| CX1g005979 | 1:4,579,176-4,580,606 | + | C1H1g05499 | C2H1g12871 | LOC_Os01g10020 | Os01g0196600 | - | Detail |