| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g10155 | 1:3,235,752-3,239,909 | - | C2H1g23784 | CX1g001907 | LOC_Os01g07700 | Os01g0171800 | - | Detail |
| C1H1g26958 | 1:3,243,405-3,246,785 | + | C2H1g20738 | CX1g002415 | LOC_Os01g07710 | - | - | Detail |
| C1H1g20095 | 1:3,246,360-3,250,029 | - | C2H1g20386 | CX1g006763 | LOC_Os01g07720 | Os01g0172000 | - | Detail |
| C1H1g10981 | 1:3,252,323-3,254,633 | + | C2H1g03942 | CX1g003588 | LOC_Os01g07730 | Os01g0172100 | - | Detail |
| C1H1g04902 | 1:3,254,723-3,259,499 | - | C2H1g18220 | CX1g004788 | LOC_Os01g07740 | Os01g0172200 | OsDB10 | Detail |
| C1H1g23634 | 1:3,260,816-3,263,868 | - | C2H1g18869 | CX1g001295 | LOC_Os01g07750 | Os01g0172300 | - | Detail |
| C1H1g21846 | 1:3,264,902-3,269,142 | - | C2H1g28778 | CX1g001900 | LOC_Os01g07760 | Os01g0172400 | - | Detail |
| C1H1g19012 | 1:3,271,684-3,273,520 | + | C2H1g21544 | CX1g005114 | LOC_Os01g07770 | Os01g0172600 | - | Detail |
| C1H1g10453 | 1:3,275,994-3,276,566 | + | C2H1g20728 | CX1g002646 | LOC_Os01g07780 | Os01g0172800 | - | Detail |
| C1H1g07102 | 1:3,277,768-3,280,638 | + | C2H1g22521 | CX1g000708 | LOC_Os01g07790 | Os01g0172900 | - | Detail |
| C1H1g22748 | 1:3,280,796-3,282,208 | - | C2H1g05856 | CX1g005561 | LOC_Os01g07800 | Os01g0173000 | - | Detail |
| C1H1g06548 | 1:3,282,970-3,284,387 | - | C2H1g12136 | CX1g002508 | LOC_Os01g07810 | Os01g0173100 | - | Detail |
| C1H1g18797 | 1:3,296,955-3,298,669 | + | C2H1g26590 | CX1g005870 | LOC_Os01g07850 | Os01g0173600 | - | Detail |
| C1H1g19078 | 1:3,315,371-3,321,084 | + | C2H1g11564 | CX1g003910 | LOC_Os01g07870 | Os01g0173900 | - | Detail |
| C1H1g28967 | 1:3,322,095-3,322,924 | - | C2H1g09395 | CX1g004606 | LOC_Os01g07880 | Os01g0174000 | OsHY5L3, OsbZIP01, OsRE1 | Detail |
| C1H1g00770 | 1:3,323,021-3,323,475 | - | - | - | - | - | - | Detail |
| C1H1g06431 | 1:3,332,283-3,336,538 | - | C2H1g12786 | CX1g006673 | LOC_Os01g07910 | Os01g0174300 | - | Detail |
| C1H1g24697 | 1:3,339,300-3,341,987 | - | C2H1g18737 | CX1g002809 | LOC_Os01g07920 | Os01g0174500 | - | Detail |
| C1H1g15491 | 1:3,342,384-3,343,373 | - | C2H1g16794 | CX1g002809 | LOC_Os01g07930 | Os01g0174600 | - | Detail |
| C1H1g13210 | 1:3,347,432-3,354,686 | - | C2H1g29949 | CX1g001687 | LOC_Os01g07940 | Os01g0174700 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005975 | 1:4,399,253-4,400,499 | + | C1H1g27970 | C2H1g05843 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| CX1g003550 | 1:4,401,043-4,402,909 | - | C1H1g11468 | C2H1g21862 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| CX1g000614 | 1:4,404,573-4,408,077 | - | C1H1g10688 | C2H1g17174 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| CX1g006629 | 1:4,412,119-4,418,885 | + | C1H1g13152 | C2H1g04548 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| CX1g002400 | 1:4,419,653-4,422,938 | - | C1H1g06151 | C2H1g08327 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| CX1g002438 | 1:4,428,357-4,428,530 | + | - | - | - | - | - | Detail |
| CX1g001862 | 1:4,432,457-4,432,636 | + | - | - | - | - | - | Detail |
| CX1g002653 | 1:4,433,707-4,435,874 | - | C1H1g16281 | C2H1g05163 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| CX1g005297 | 1:4,437,032-4,437,187 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000713 | 1:4,441,147-4,445,374 | - | C1H1g29130 | C2H1g20037 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| CX1g000442 | 1:4,458,075-4,458,455 | + | - | C2H1g05731 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| CX1g005498 | 1:4,468,383-4,470,021 | + | C1H1g00947 | C2H1g26832 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| CX1g000509 | 1:4,478,732-4,484,653 | - | C1H1g03034 | C2H1g03615 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| CX1g001794 | 1:4,496,357-4,496,833 | - | C1H1g10561 | C2H1g17887 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| CX1g003898 | 1:4,500,904-4,501,767 | - | C1H1g31641 | C2H1g30117 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| CX1g000703 | 1:4,508,201-4,510,301 | - | C1H1g28666 | C2H1g28884 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| CX1g000750 | 1:4,514,029-4,514,238 | - | - | - | - | - | - | Detail |
| CX1g006997 | 1:4,559,561-4,561,268 | + | C1H1g18771 | C2H1g19303 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| CX1g000104 | 1:4,575,690-4,576,289 | - | - | C2H1g22870 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| CX1g005979 | 1:4,579,176-4,580,606 | + | C1H1g05499 | C2H1g12871 | LOC_Os01g10020 | Os01g0196600 | - | Detail |