| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g01190 | 1:24,984,174-24,987,077 | + | C2H1g15446 | CX1g006805 | LOC_Os01g48930 | Os01g0681600 | - | Detail |
| C1H1g12744 | 1:24,995,411-25,007,176 | - | C2H1g14692 | CX1g000610 | LOC_Os01g48960 | Os01g0681900 | OsGOGAT1, NADH-GOGAT1 | Detail |
| C1H1g07001 | 1:25,023,129-25,028,085 | - | C2H1g11093 | CX1g000049 | LOC_Os01g48980 | Os01g0682200 | - | Detail |
| C1H1g06026 | 1:25,030,417-25,034,298 | + | C2H1g19818 | CX1g000149 | LOC_Os01g48990 | Os01g0682500 | - | Detail |
| C1H1g18921 | 1:25,034,677-25,041,336 | + | C2H1g30064 | CX1g000149 | LOC_Os01g49000 | Os01g0683100 | - | Detail |
| C1H1g07773 | 1:25,064,944-25,068,750 | + | C2H1g03389 | - | LOC_Os01g49010 | Os01g0683400 | OsORC4 | Detail |
| C1H1g21597 | 1:25,068,927-25,076,322 | - | C2H1g19532 | CX5g038117 | LOC_Os01g49024 | Os01g0683550 | - | Detail |
| C1H1g21001 | 1:25,078,174-25,080,264 | + | C2H1g08995 | CX1g002822 | LOC_Os01g49026 | Os01g0683600 | - | Detail |
| C1H1g08336 | 1:25,081,353-25,082,226 | + | C2H1g03855 | CX1g003922 | LOC_Os01g49030 | Os01g0683700 | - | Detail |
| C1H1g07796 | 1:25,123,183-25,126,721 | + | C2H1g15370 | CX1g000472 | LOC_Os01g49060 | Os01g0684800 | - | Detail |
| C1H1g29982 | 1:25,127,179-25,130,561 | - | C2H1g12213 | CX1g001799 | LOC_Os01g49120 | Os01g0684900 | - | Detail |
| C1H1g28582 | 1:25,133,148-25,133,829 | + | - | CX1g003066 | LOC_Os01g45100 | Os01g0117000 | - | Detail |
| C1H1g11448 | 1:25,135,044-25,138,407 | - | C2H1g09209 | CX1g003730 | LOC_Os01g49150 | Os01g0685200 | - | Detail |
| C1H1g30171 | 1:25,141,963-25,143,113 | + | C2H1g29921 | CX1g007197 | LOC_Os01g49160 | Os01g0685400 | RGN1 | Detail |
| C1H1g13712 | 1:25,153,436-25,164,749 | - | C2H1g15034 | CX1g004222 | LOC_Os01g49180 | Os01g0685500 | - | Detail |
| C1H1g18062 | 1:25,169,415-25,173,735 | + | C2H1g05241 | CX1g004551 | LOC_Os01g49190 | Os01g0685800 | - | Detail |
| C1H1g18271 | 1:25,174,806-25,179,342 | + | C2H1g18560 | CX1g003807 | LOC_Os01g49200 | Os01g0685900 | - | Detail |
| C1H1g07342 | 1:25,187,753-25,190,296 | + | C2H1g28047 | CX1g002173 | LOC_Os01g49230 | Os01g0686200 | - | Detail |
| C1H1g14493 | 1:25,192,483-25,193,901 | + | C2H1g26387 | CX1g002143 | LOC_Os01g49240 | Os01g0686300 | - | Detail |
| C1H1g17022 | 1:25,197,386-25,202,413 | + | C2H1g21728 | CX1g000503 | LOC_Os01g49250 | Os01g0686400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005975 | 1:4,399,253-4,400,499 | + | C1H1g27970 | C2H1g05843 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| CX1g003550 | 1:4,401,043-4,402,909 | - | C1H1g11468 | C2H1g21862 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| CX1g000614 | 1:4,404,573-4,408,077 | - | C1H1g10688 | C2H1g17174 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| CX1g006629 | 1:4,412,119-4,418,885 | + | C1H1g13152 | C2H1g04548 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| CX1g002400 | 1:4,419,653-4,422,938 | - | C1H1g06151 | C2H1g08327 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| CX1g002438 | 1:4,428,357-4,428,530 | + | - | - | - | - | - | Detail |
| CX1g001862 | 1:4,432,457-4,432,636 | + | - | - | - | - | - | Detail |
| CX1g002653 | 1:4,433,707-4,435,874 | - | C1H1g16281 | C2H1g05163 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| CX1g005297 | 1:4,437,032-4,437,187 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000713 | 1:4,441,147-4,445,374 | - | C1H1g29130 | C2H1g20037 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| CX1g000442 | 1:4,458,075-4,458,455 | + | - | C2H1g05731 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| CX1g005498 | 1:4,468,383-4,470,021 | + | C1H1g00947 | C2H1g26832 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| CX1g000509 | 1:4,478,732-4,484,653 | - | C1H1g03034 | C2H1g03615 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| CX1g001794 | 1:4,496,357-4,496,833 | - | C1H1g10561 | C2H1g17887 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| CX1g003898 | 1:4,500,904-4,501,767 | - | C1H1g31641 | C2H1g30117 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| CX1g000703 | 1:4,508,201-4,510,301 | - | C1H1g28666 | C2H1g28884 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| CX1g000750 | 1:4,514,029-4,514,238 | - | - | - | - | - | - | Detail |
| CX1g006997 | 1:4,559,561-4,561,268 | + | C1H1g18771 | C2H1g19303 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| CX1g000104 | 1:4,575,690-4,576,289 | - | - | C2H1g22870 | LOC_Os01g10010 | Os01g0196500 | - | Detail |
| CX1g005979 | 1:4,579,176-4,580,606 | + | C1H1g05499 | C2H1g12871 | LOC_Os01g10020 | Os01g0196600 | - | Detail |