| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g09365 | 3:14,022,692-14,029,760 | - | C1H3g05327 | CX3g027782 | LOC_Os03g27510 | Os03g0393700 | - | Detail |
| C2H3g30087 | 3:14,032,064-14,034,436 | - | C1H3g01352 | CX3g026293 | LOC_Os03g32580 | Os03g0211900 | - | Detail |
| C2H3g11623 | 3:14,034,559-14,035,580 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g10908 | 3:14,044,828-14,047,298 | - | C1H3g19955 | CX3g027788 | LOC_Os03g32580 | Os03g0145102 | - | Detail |
| C2H3g03280 | 3:14,048,897-14,050,147 | + | - | - | - | - | - | Detail |
| C2H3g07142 | 3:14,050,595-14,051,936 | + | - | - | - | - | - | Detail |
| C2H3g17405 | 3:14,057,376-14,058,446 | - | - | - | - | - | - | Detail |
| C2H3g04527 | 3:14,069,232-14,069,991 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g28189 | 3:14,070,010-14,070,943 | - | C1H3g05517 | CX3g028044 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g21452 | 3:14,083,851-14,085,452 | - | C1H3g17401 | CX3g029574 | - | Os03g0184000 | OsPDS | Detail |
| C2H3g10220 | 3:14,094,321-14,100,635 | - | C1H3g27278 | CX3g031229 | LOC_Os03g28270 | Os03g0400800 | - | Detail |
| C2H3g08253 | 3:14,104,054-14,104,308 | - | - | - | - | - | - | Detail |
| C2H3g06277 | 3:14,167,794-14,171,626 | - | C1H3g13238 | CX3g029516 | LOC_Os03g32580 | Os03g0773700 | - | Detail |
| C2H3g13071 | 3:14,219,645-14,219,983 | - | - | - | LOC_Os02g28210 | - | - | Detail |
| C2H3g00521 | 3:14,231,740-14,241,021 | - | C1H3g28596 | CX3g026827 | LOC_Os03g27550 | Os03g0393300 | - | Detail |
| C2H3g03469 | 3:14,295,554-14,300,370 | - | C1H3g26998 | CX3g027706 | LOC_Os03g27550 | Os03g0393700 | - | Detail |
| C2H3g01147 | 3:14,307,579-14,309,156 | + | C1H3g17152 | CX3g026110 | LOC_Os03g27610 | Os03g0393900 | OsMATL, OspPLAIIφ, OspPLAIIphi, OsPLP1, PLP1, OspPLAIIbeta | Detail |
| C2H3g26978 | 3:14,380,764-14,384,352 | - | C1H3g03234 | CX3g027952 | LOC_Os03g27760 | Os03g0394900 | - | Detail |
| C2H3g09617 | 3:14,398,273-14,401,752 | - | C1H3g11733 | CX3g030447 | LOC_Os03g27770 | Os03g0395000 | - | Detail |
| C2H3g01443 | 3:14,407,064-14,410,216 | + | C1H3g19183 | CX3g028476 | LOC_Os03g27780 | Os03g0395100 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX10g010744 | 10:12,364,839-12,365,228 | + | C1H3g13321 | C2H3g08092 | LOC_Os10g26100 | Os03g0172700 | - | Detail |
| CX10g008092 | 10:12,375,402-12,375,719 | + | - | - | - | - | - | Detail |
| CX10g010713 | 10:12,376,399-12,377,844 | + | - | - | - | - | - | Detail |
| CX10g009597 | 10:12,386,906-12,387,157 | - | - | - | - | Os10g0400700 | - | Detail |
| CX10g009792 | 10:12,389,151-12,393,779 | - | C1H10g09798 | C2H10g05646 | LOC_Os10g26130 | Os10g0400800 | - | Detail |
| CX10g007416 | 10:12,394,443-12,394,733 | - | - | - | - | - | - | Detail |
| CX10g007582 | 10:12,398,683-12,404,563 | + | C1H10g17747 | C2H10g14652 | LOC_Os10g26140 | Os10g0400900 | - | Detail |
| CX10g009486 | 10:12,405,852-12,406,088 | - | - | C2H10g27373 | LOC_Os10g26150 | Os10g0401000 | - | Detail |
| CX10g008323 | 10:12,410,152-12,414,341 | + | C1H10g07798 | C2H10g03850 | LOC_Os10g26164 | Os10g0401100 | - | Detail |
| CX10g010682 | 10:12,418,143-12,423,445 | - | C1H10g12994 | C2H10g09742 | LOC_Os10g26280 | Os10g0402200 | ORC3, OsORC3 | Detail |
| CX10g007841 | 10:12,430,666-12,432,626 | - | C1H10g19566 | C2H10g26563 | LOC_Os10g26290 | Os10g0402400 | - | Detail |
| CX10g009015 | 10:12,439,198-12,439,599 | + | - | - | LOC_Os05g14034 | Os05g0228900 | - | Detail |
| CX10g009765 | 10:12,468,052-12,468,279 | - | - | - | - | - | - | Detail |
| CX10g007319 | 10:12,480,805-12,481,788 | - | C1H10g09520 | C2H10g21713 | LOC_Os10g26340 | Os10g0403000 | PLA1, pla1, plt1, CYP78A11 | Detail |
| CX10g008675 | 10:12,504,603-12,509,253 | + | C1H10g29036 | C2H10g29616 | LOC_Os10g26390 | Os10g0403700 | - | Detail |
| CX10g010536 | 10:12,518,408-12,518,781 | - | C1H10g23860 | C2H10g19378 | LOC_Os10g26410 | Os10g0403800 | OsbHLH174 | Detail |
| CX10g008425 | 10:12,543,137-12,546,950 | + | C1H10g20492 | C2H10g14621 | LOC_Os10g26430 | Os09g0408300 | - | Detail |
| CX10g010603 | 10:12,548,179-12,548,775 | + | C1H10g20492 | - | - | - | - | Detail |
| CX10g010293 | 10:12,559,658-12,560,039 | + | C1H10g22107 | C2H10g15527 | LOC_Os10g26460 | Os10g0404300 | OsbHLH173 | Detail |
| CX10g007588 | 10:12,564,904-12,577,594 | + | C1H10g29328 | C2H10g02076 | LOC_Os10g26470 | Os10g0404500 | OsSUT3 | Detail |