| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g09842 | 4:19,965,873-19,967,760 | + | C2H4g10950 | CX4g031630 | LOC_Os04g38600 | Os04g0459500 | - | Detail |
| C1H4g22419 | 4:19,968,451-19,970,778 | - | C2H4g21093 | CX4g035534 | LOC_Os04g38610 | Os04g0459600 | - | Detail |
| C1H4g02624 | 4:19,972,528-19,975,843 | - | C2H4g29769 | CX4g031435 | LOC_Os04g38620 | Os04g0459700 | - | Detail |
| C1H4g06613 | 4:19,981,869-19,985,349 | - | C2H4g23801 | CX4g032546 | LOC_Os04g38630 | Os04g0459800 | - | Detail |
| C1H4g08376 | 4:19,988,929-19,994,340 | + | C2H4g04441 | CX4g034165 | LOC_Os04g38640 | Os04g0459900 | - | Detail |
| C1H4g19139 | 4:20,001,646-20,003,575 | + | C2H4g25768 | CX4g035386 | LOC_Os04g38670 | Os04g0460200 | OsATL14, Bh4 | Detail |
| C1H4g00598 | 4:20,019,678-20,021,871 | + | C2H4g01029 | CX4g036106 | LOC_Os04g38680 | Os04g0460300 | - | Detail |
| C1H4g20972 | 4:20,026,350-20,027,141 | + | C2H4g15731 | CX4g033651 | LOC_Os04g38690 | Os04g0460400 | CASP5, OsCASP5 | Detail |
| C1H4g26714 | 4:20,029,626-20,032,112 | + | C2H4g29420 | CX4g035215 | LOC_Os04g38700 | Os04g0460500 | - | Detail |
| C1H4g00856 | 4:20,038,253-20,039,873 | + | C2H4g09182 | CX4g035794 | LOC_Os04g38720 | Os04g0460600 | NAC2, OsNAC2, ONAC004, ONAC4, ONAC034, ONAC34, ONAC058, ONAC58, OMTN2, Ostil1, OsNAC2/ONAC004, OsORE1.2 | Detail |
| C1H4g10275 | 4:20,046,098-20,049,027 | - | C2H4g21139 | CX4g031747 | LOC_Os04g38730 | - | - | Detail |
| C1H4g16192 | 4:20,070,094-20,073,348 | + | C2H4g04335 | CX4g033056 | LOC_Os04g38740 | Os04g0461000 | Os2R_MYB43 | Detail |
| C1H4g01178 | 4:20,073,898-20,075,514 | + | C2H4g17531 | CX4g035604 | LOC_Os04g38750 | Os04g0461100 | - | Detail |
| C1H4g10260 | 4:20,086,206-20,094,834 | + | C2H4g02198 | CX4g035338 | LOC_Os04g38770 | Os04g0461300 | - | Detail |
| C1H4g16630 | 4:20,087,292-20,103,395 | - | C2H4g30121 | - | - | - | - | Detail |
| C1H4g09833 | 4:20,107,659-20,108,803 | - | C2H4g15152 | CX4g032154 | - | Os04g0461600 | - | Detail |
| C1H4g11139 | 4:20,114,503-20,117,717 | - | C2H4g04073 | CX4g033096 | LOC_Os04g38810 | Os04g0461800 | - | Detail |
| C1H4g20046 | 4:20,119,778-20,126,787 | - | C2H4g14143 | CX4g035671 | LOC_Os04g38850 | Os04g0462300 | - | Detail |
| C1H4g28167 | 4:20,124,184-20,124,561 | + | C2H4g25655 | CX4g034495 | LOC_Os04g38840 | Os04g0462200 | - | Detail |
| C1H4g07343 | 4:20,127,971-20,130,002 | - | C2H4g21045 | CX4g031760 | LOC_Os04g38860 | Os04g0462400 | OsLHT4 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004726 | 1:3,896,898-3,900,116 | + | C1H1g05447 | C2H1g11034 | LOC_Os01g08850 | Os01g0184000 | - | Detail |
| CX1g006630 | 1:3,901,128-3,901,628 | - | - | C2H1g10471 | LOC_Os01g08860 | Os01g0184100 | OsHsp18.0, Oshsp18.0-CII | Detail |
| CX1g006276 | 1:3,902,918-3,907,044 | - | C1H1g08258 | C2H1g25930 | LOC_Os01g08930 | Os01g0184500 | - | Detail |
| CX1g005580 | 1:3,913,281-3,914,043 | + | C1H1g29228 | C2H1g18729 | LOC_Os01g08950 | Os01g0184700 | - | Detail |
| CX1g001833 | 1:3,914,445-3,917,119 | - | C1H1g07230 | C2H1g08065 | LOC_Os01g08960 | Os01g0184800 | - | Detail |
| CX1g001927 | 1:3,917,988-3,923,800 | + | C1H1g00754 | C2H1g16483 | LOC_Os01g08970 | Os01g0184900 | - | Detail |
| CX1g006005 | 1:3,925,708-3,929,395 | + | C1H1g18602 | C2H1g08712 | LOC_Os01g08990 | Os01g0185100 | - | Detail |
| CX1g000003 | 1:3,930,875-3,936,555 | - | C1H1g09937 | C2H1g10102 | LOC_Os01g09000 | Os01g0185200 | - | Detail |
| CX1g005455 | 1:3,944,456-3,948,578 | + | C1H1g12656 | C2H1g17955 | LOC_Os01g09010 | Os01g0185300 | - | Detail |
| CX1g004120 | 1:3,950,138-3,955,274 | + | C1H1g03940 | C2H1g17802 | LOC_Os01g09020 | Os01g0185400 | OsCBE1 | Detail |
| CX1g004591 | 1:3,958,948-3,962,569 | + | C1H1g23338 | C2H1g12463 | LOC_Os01g09030 | Os01g0185500 | - | Detail |
| CX1g000928 | 1:3,972,225-3,974,181 | + | C1H1g06268 | C2H1g25484 | LOC_Os01g09080 | Os01g0185900 | - | Detail |
| CX1g005225 | 1:3,975,121-3,975,579 | - | C1H12g13964 | C2H1g20040 | LOC_Os01g13840 | - | - | Detail |
| CX1g004373 | 1:3,975,290-3,976,769 | + | C1H1g22230 | C2H1g16831 | - | - | - | Detail |
| CX1g005539 | 1:3,979,880-3,980,542 | - | C1H1g26932 | C2H1g00345 | LOC_Os01g09100 | Os01g0186000 | WRKY10 | Detail |
| CX1g004425 | 1:3,988,208-3,991,178 | - | C1H1g00047 | C2H1g05521 | LOC_Os01g09120 | Os01g0186200 | - | Detail |
| CX1g002492 | 1:3,993,793-3,994,536 | - | C1H1g15730 | C2H1g16572 | LOC_Os01g09130 | Os01g0186400 | - | Detail |
| CX1g002963 | 1:4,028,738-4,029,364 | + | - | C2H1g25627 | LOC_Os01g09190 | Os01g0186600 | - | Detail |
| CX1g001893 | 1:4,036,319-4,045,151 | - | C1H1g09605 | C2H1g24918 | LOC_Os01g09200 | Os01g0186700 | OsSTK38, TINY1 | Detail |
| CX1g000937 | 1:4,054,867-4,056,225 | + | - | C2H1g06902 | LOC_Os01g09220 | Os01g0186900 | - | Detail |