| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g08811 | 1:22,727,992-22,729,387 | + | C2H1g24347 | CX1g000338 | LOC_Os01g44090 | Os01g0631500 | - | Detail |
| C1H1g07009 | 1:22,749,888-22,754,361 | + | C2H1g14152 | CX1g001009 | LOC_Os01g44110 | Os01g0631700 | - | Detail |
| C1H1g05320 | 1:22,758,481-22,764,326 | + | C2H1g16370 | CX1g000935 | LOC_Os01g44130 | Os01g0631900 | - | Detail |
| C1H1g12869 | 1:22,778,149-22,779,192 | + | C2H1g06740 | - | - | - | - | Detail |
| C1H1g13707 | 1:22,789,394-22,789,909 | - | C2H1g03548 | - | LOC_Os01g44210 | Os01g0633000 | - | Detail |
| C1H1g09519 | 1:22,799,911-22,808,100 | + | C2H1g23506 | CX1g000578 | LOC_Os01g44220 | Os01g0633100 | AGPL2, OsAGPL2, osagpl2, APL2, OsAPL2, AGPiso, sh2, Sh2 | Detail |
| C1H1g25629 | 1:22,809,738-22,813,559 | + | C2H1g25610 | CX1g004196 | LOC_Os01g44230 | Os01g0633200 | - | Detail |
| C1H1g17417 | 1:22,815,019-22,817,459 | + | C2H1g21259 | CX1g001984 | LOC_Os01g44250 | Os01g0633400 | - | Detail |
| C1H1g26792 | 1:22,822,413-22,824,342 | + | C2H1g13154 | CX1g005798 | LOC_Os01g44260 | Os01g0633500 | Rd, DFR | Detail |
| C1H1g26567 | 1:22,827,646-22,835,145 | - | C2H1g30459 | CX1g002472 | LOC_Os01g44310 | Os01g0634300 | - | Detail |
| C1H1g01839 | 1:22,861,358-22,863,345 | - | C2H1g20909 | CX1g002072 | LOC_Os01g44330 | Os01g0634500 | - | Detail |
| C1H1g04340 | 1:22,864,879-22,866,443 | - | C2H1g10174 | CX1g000429 | LOC_Os01g44340 | Os01g0634600 | - | Detail |
| C1H1g02990 | 1:22,868,213-22,870,234 | + | C2H1g02801 | CX1g003750 | LOC_Os01g44360 | Os01g0634900 | - | Detail |
| C1H1g03527 | 1:22,887,199-22,890,609 | + | C2H1g14029 | CX1g001073 | LOC_Os01g44394 | Os01g0635400 | - | Detail |
| C1H1g07657 | 1:22,892,905-22,894,371 | + | C2H1g03825 | CX8g052292 | LOC_Os01g44394 | Os01g0635400 | - | Detail |
| C1H1g22176 | 1:22,898,659-22,904,337 | - | C2H1g05065 | CX1g000646 | LOC_Os01g44430 | Os01g0635600 | - | Detail |
| C1H1g27414 | 1:22,918,386-22,920,878 | - | C2H1g18946 | CX1g003935 | LOC_Os01g44960 | Os01g0636400 | - | Detail |
| C1H1g00331 | 1:22,930,406-22,934,280 | + | C2H1g07403 | CX1g001605 | LOC_Os01g44970 | Os01g0636500 | - | Detail |
| C1H1g13180 | 1:22,936,336-22,939,660 | - | C2H1g22263 | CX1g007252 | LOC_Os01g44980 | Os01g0637600 | OsPDF1B | Detail |
| C1H1g21245 | 1:22,943,227-22,944,039 | + | C2H1g15078 | CX1g000311 | LOC_Os01g45090 | Os01g0637800 | OsMYB305 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003309 | 1:3,766,362-3,769,753 | - | C1H1g29421 | C2H1g05619 | LOC_Os01g08580 | Os01g0181000 | - | Detail |
| CX1g005635 | 1:3,771,578-3,773,947 | + | C1H1g05943 | C2H1g09388 | LOC_Os01g08650 | Os01g0182100 | - | Detail |
| CX1g000651 | 1:3,779,946-3,780,101 | + | - | - | - | - | - | Detail |
| CX1g002190 | 1:3,781,870-3,783,613 | - | C1H1g28299 | C2H1g25325 | LOC_Os01g08660 | Os01g0182200 | OsSIP1 | Detail |
| CX1g003026 | 1:3,786,332-3,786,865 | - | - | C2H1g14172 | LOC_Os01g08670 | Os01g0182300 | - | Detail |
| CX1g002385 | 1:3,791,447-3,794,858 | - | C1H1g29977 | C2H1g08590 | LOC_Os01g08680 | Os01g0182400 | - | Detail |
| CX1g002667 | 1:3,794,975-3,795,677 | + | C1H1g01569 | C2H1g03691 | LOC_Os01g08690 | Os01g0182500 | - | Detail |
| CX1g006236 | 1:3,798,023-3,804,558 | - | C1H1g31395 | C2H1g22882 | LOC_Os01g08700 | Os01g0182600 | - | Detail |
| CX1g007148 | 1:3,815,826-3,822,959 | - | C1H1g26932 | C2H1g00342 | LOC_Os01g08710 | Os01g0182700 | OsWRKY102 | Detail |
| CX1g003782 | 1:3,828,612-3,846,626 | + | C1H1g19772 | C2H1g11324 | LOC_Os01g08750 | Os01g0182900 | - | Detail |
| CX1g000301 | 1:3,848,886-3,850,742 | + | C1H1g02231 | C2H1g13544 | LOC_Os01g08760 | Os01g0183000 | - | Detail |
| CX1g000793 | 1:3,851,997-3,855,753 | + | C1H1g31443 | C2H1g26288 | LOC_Os01g08770 | Os01g0183100 | - | Detail |
| CX1g007243 | 1:3,856,802-3,861,200 | - | C1H1g26343 | C2H1g17275 | LOC_Os01g08780 | Os01g0183300 | - | Detail |
| CX1g001420 | 1:3,868,884-3,869,645 | + | - | C2H1g04178 | LOC_Os01g08790 | Os01g0183400 | OsNF-YC13 | Detail |
| CX1g000827 | 1:3,870,831-3,872,479 | + | C1H1g28662 | C2H1g06833 | LOC_Os01g08800 | Os01g0183500 | - | Detail |
| CX1g003927 | 1:3,874,485-3,876,011 | + | C1H1g28662 | C2H1g13017 | LOC_Os01g08810 | Os01g0183600 | - | Detail |
| CX1g000642 | 1:3,877,779-3,878,192 | - | C1H1g05359 | C2H1g27975 | LOC_Os01g08814 | Os01g0183633 | - | Detail |
| CX1g003359 | 1:3,882,870-3,884,772 | - | C1H1g07821 | C2H1g27122 | LOC_Os01g08820 | Os01g0218800 | - | Detail |
| CX1g001853 | 1:3,887,760-3,888,812 | + | C1H1g01391 | C2H1g12240 | LOC_Os01g08830 | Os01g0183800 | - | Detail |
| CX1g004917 | 1:3,889,343-3,889,885 | + | C1H1g01391 | C2H1g25026 | LOC_Os01g08840 | Os01g0183850 | - | Detail |