| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g00412 | 1:1,205,291-1,207,738 | + | C2H1g24576 | CX1g003465 | LOC_Os01g03660 | Os01g0127400 | - | Detail |
| C1H1g25838 | 1:1,209,203-1,209,889 | + | C2H1g17865 | CX1g002042 | LOC_Os01g03720 | Os01g0127450 | - | Detail |
| C1H1g17663 | 1:1,210,419-1,211,515 | + | C2H1g02319 | CX1g005179 | LOC_Os01g03670 | Os01g0127500 | OsTKPR2 | Detail |
| C1H1g24827 | 1:1,215,246-1,217,557 | + | C2H1g03781 | CX1g006285 | LOC_Os01g02760 | Os01g0127700 | - | Detail |
| C1H1g05668 | 1:1,217,661-1,218,315 | + | C2H1g03781 | CX1g006285 | LOC_Os01g03690 | Os01g0117400 | - | Detail |
| C1H1g08835 | 1:1,225,922-1,230,986 | + | C2H1g13836 | CX1g004218 | LOC_Os01g03710 | Os01g0127900 | - | Detail |
| C1H1g25654 | 1:1,241,292-1,242,522 | - | C2H1g25959 | CX1g002896 | LOC_Os01g03720 | Os01g0128000 | MYB1, Os2R_MYB1 | Detail |
| C1H1g31764 | 1:1,254,615-1,256,427 | - | C2H1g01385 | CX1g004405 | LOC_Os01g03740 | Os01g0128100 | - | Detail |
| C1H1g04042 | 1:1,257,095-1,260,002 | + | C2H1g18960 | CX1g004550 | LOC_Os01g03730 | Os01g0128200 | - | Detail |
| C1H1g30874 | 1:1,260,240-1,261,552 | - | C2H1g15883 | CX1g002239 | LOC_Os01g03750 | Os01g0128300 | MHZ4 | Detail |
| C1H1g07436 | 1:1,262,139-1,267,477 | - | C2H1g19347 | CX1g006333 | LOC_Os01g03760 | Os01g0128400 | - | Detail |
| C1H1g20521 | 1:1,272,265-1,280,309 | + | C2H1g18545 | CX1g003056 | LOC_Os01g03820 | Os01g0128800 | - | Detail |
| C1H1g27481 | 1:1,292,873-1,294,279 | + | C2H1g10390 | CX1g002103 | LOC_Os01g03840 | Os01g0129200 | SL1, sl1(t), sl1, stl1, opb, OPB1, ps, PS, OPB | Detail |
| C1H1g30507 | 1:1,306,551-1,309,571 | - | C2H1g17049 | CX1g003490 | LOC_Os01g03870 | Os01g0129500 | - | Detail |
| C1H1g11492 | 1:1,322,229-1,323,238 | + | C2H1g13371 | CX1g006241 | LOC_Os01g03890 | Os01g0129600 | - | Detail |
| C1H1g30416 | 1:1,349,867-1,352,853 | - | C2H1g29639 | CX1g005809 | LOC_Os01g03914 | Os01g0130000 | - | Detail |
| C1H1g04895 | 1:1,357,467-1,357,897 | - | C2H1g15465 | - | LOC_Os01g03914 | - | - | Detail |
| C1H1g15284 | 1:1,383,194-1,387,792 | + | C2H1g02978 | CX1g003798 | LOC_Os01g03950 | Os01g0130400 | - | Detail |
| C1H1g17044 | 1:1,417,733-1,418,275 | + | C2H1g14763 | - | - | - | - | Detail |
| C1H1g07180 | 1:1,419,589-1,420,156 | + | C2H1g14763 | - | - | - | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003309 | 1:3,766,362-3,769,753 | - | C1H1g29421 | C2H1g05619 | LOC_Os01g08580 | Os01g0181000 | - | Detail |
| CX1g005635 | 1:3,771,578-3,773,947 | + | C1H1g05943 | C2H1g09388 | LOC_Os01g08650 | Os01g0182100 | - | Detail |
| CX1g000651 | 1:3,779,946-3,780,101 | + | - | - | - | - | - | Detail |
| CX1g002190 | 1:3,781,870-3,783,613 | - | C1H1g28299 | C2H1g25325 | LOC_Os01g08660 | Os01g0182200 | OsSIP1 | Detail |
| CX1g003026 | 1:3,786,332-3,786,865 | - | - | C2H1g14172 | LOC_Os01g08670 | Os01g0182300 | - | Detail |
| CX1g002385 | 1:3,791,447-3,794,858 | - | C1H1g29977 | C2H1g08590 | LOC_Os01g08680 | Os01g0182400 | - | Detail |
| CX1g002667 | 1:3,794,975-3,795,677 | + | C1H1g01569 | C2H1g03691 | LOC_Os01g08690 | Os01g0182500 | - | Detail |
| CX1g006236 | 1:3,798,023-3,804,558 | - | C1H1g31395 | C2H1g22882 | LOC_Os01g08700 | Os01g0182600 | - | Detail |
| CX1g007148 | 1:3,815,826-3,822,959 | - | C1H1g26932 | C2H1g00342 | LOC_Os01g08710 | Os01g0182700 | OsWRKY102 | Detail |
| CX1g003782 | 1:3,828,612-3,846,626 | + | C1H1g19772 | C2H1g11324 | LOC_Os01g08750 | Os01g0182900 | - | Detail |
| CX1g000301 | 1:3,848,886-3,850,742 | + | C1H1g02231 | C2H1g13544 | LOC_Os01g08760 | Os01g0183000 | - | Detail |
| CX1g000793 | 1:3,851,997-3,855,753 | + | C1H1g31443 | C2H1g26288 | LOC_Os01g08770 | Os01g0183100 | - | Detail |
| CX1g007243 | 1:3,856,802-3,861,200 | - | C1H1g26343 | C2H1g17275 | LOC_Os01g08780 | Os01g0183300 | - | Detail |
| CX1g001420 | 1:3,868,884-3,869,645 | + | - | C2H1g04178 | LOC_Os01g08790 | Os01g0183400 | OsNF-YC13 | Detail |
| CX1g000827 | 1:3,870,831-3,872,479 | + | C1H1g28662 | C2H1g06833 | LOC_Os01g08800 | Os01g0183500 | - | Detail |
| CX1g003927 | 1:3,874,485-3,876,011 | + | C1H1g28662 | C2H1g13017 | LOC_Os01g08810 | Os01g0183600 | - | Detail |
| CX1g000642 | 1:3,877,779-3,878,192 | - | C1H1g05359 | C2H1g27975 | LOC_Os01g08814 | Os01g0183633 | - | Detail |
| CX1g003359 | 1:3,882,870-3,884,772 | - | C1H1g07821 | C2H1g27122 | LOC_Os01g08820 | Os01g0218800 | - | Detail |
| CX1g001853 | 1:3,887,760-3,888,812 | + | C1H1g01391 | C2H1g12240 | LOC_Os01g08830 | Os01g0183800 | - | Detail |
| CX1g004917 | 1:3,889,343-3,889,885 | + | C1H1g01391 | C2H1g25026 | LOC_Os01g08840 | Os01g0183850 | - | Detail |