| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g23946 | 5:24,298,161-24,299,642 | + | C2H5g15674 | - | LOC_Os05g51650 | Os05g0594900 | - | Detail |
| C1H5g07547 | 5:24,299,970-24,300,566 | - | C2H5g18619 | CX5g039507 | LOC_Os05g51660 | Os05g0595000 | - | Detail |
| C1H5g22966 | 5:24,306,790-24,310,218 | + | C2H5g04566 | CX5g037190 | LOC_Os05g51670 | Os05g0595100 | OsUGE1, OsUGE-1, UGE1, UGE-1, BP1 | Detail |
| C1H5g29705 | 5:24,314,276-24,338,423 | + | C2H5g00689 | CX5g037572 | LOC_Os05g51690 | Os05g0595300 | CRCT, NRR, NRRa | Detail |
| C1H5g17200 | 5:24,314,364-24,315,098 | - | C2H5g03425 | CX5g039657 | LOC_Os05g51680 | Os05g0595200 | - | Detail |
| C1H5g10995 | 5:24,338,704-24,341,533 | - | C2H5g25216 | CX5g038125 | LOC_Os05g51700 | Os05g0595400 | - | Detail |
| C1H5g27674 | 5:24,342,371-24,344,469 | - | C2H5g14814 | CX5g041076 | LOC_Os05g51710 | Os05g0595500 | - | Detail |
| C1H5g24835 | 5:24,350,690-24,354,556 | - | C2H5g23094 | CX5g037161 | LOC_Os05g51740 | Os05g0595800 | - | Detail |
| C1H5g11204 | 5:24,357,393-24,357,937 | - | C2H5g15029 | CX5g037472 | LOC_Os05g45954 | Os05g0121600 | RSR1, OsTOE1, AP2/EREBP#090, AP2/EREBP90 | Detail |
| C1H5g19628 | 5:24,359,119-24,360,738 | + | C2H5g10878 | CX5g037109 | LOC_Os05g51750 | Os05g0596000 | - | Detail |
| C1H5g15344 | 5:24,362,940-24,363,852 | - | C2H5g03677 | CX5g040213 | LOC_Os05g51754 | Os05g0596200 | - | Detail |
| C1H5g05425 | 5:24,370,389-24,371,543 | + | C2H5g02505 | CX5g038377 | LOC_Os05g51780 | Os05g0596500 | - | Detail |
| C1H5g04142 | 5:24,380,267-24,392,932 | - | C2H5g19295 | CX5g038266 | LOC_Os05g51790 | Os05g0596600 | OsSMC5 | Detail |
| C1H5g09886 | 5:24,394,335-24,397,839 | + | C2H5g24076 | CX5g040422 | LOC_Os05g51800 | Os05g0596700 | - | Detail |
| C1H5g06124 | 5:24,399,765-24,400,578 | + | C2H5g17322 | CX5g039358 | LOC_Os05g51820 | Os05g0597000 | OsMUTE | Detail |
| C1H5g15760 | 5:24,403,463-24,406,171 | - | C2H5g24478 | CX5g038345 | LOC_Os05g51830 | Os05g0597100 | HDT1, OsHDT1, HDT701 | Detail |
| C1H5g16210 | 5:24,406,864-24,410,928 | - | C2H5g14678 | CX5g038501 | LOC_Os05g51850 | Os05g0597200 | - | Detail |
| C1H5g10848 | 5:24,413,074-24,414,807 | + | C2H5g20513 | CX5g040358 | LOC_Os05g51860 | Os05g0597400 | - | Detail |
| C1H5g07885 | 5:24,443,447-24,443,701 | - | C2H5g12335 | CX5g039366 | LOC_Os05g51900 | Os05g0597700 | - | Detail |
| C1H6g09491 | 6:33,828-40,991 | + | C2H6g15066 | CX6g041728 | LOC_Os06g01170 | Os06g0101000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003309 | 1:3,766,362-3,769,753 | - | C1H1g29421 | C2H1g05619 | LOC_Os01g08580 | Os01g0181000 | - | Detail |
| CX1g005635 | 1:3,771,578-3,773,947 | + | C1H1g05943 | C2H1g09388 | LOC_Os01g08650 | Os01g0182100 | - | Detail |
| CX1g000651 | 1:3,779,946-3,780,101 | + | - | - | - | - | - | Detail |
| CX1g002190 | 1:3,781,870-3,783,613 | - | C1H1g28299 | C2H1g25325 | LOC_Os01g08660 | Os01g0182200 | OsSIP1 | Detail |
| CX1g003026 | 1:3,786,332-3,786,865 | - | - | C2H1g14172 | LOC_Os01g08670 | Os01g0182300 | - | Detail |
| CX1g002385 | 1:3,791,447-3,794,858 | - | C1H1g29977 | C2H1g08590 | LOC_Os01g08680 | Os01g0182400 | - | Detail |
| CX1g002667 | 1:3,794,975-3,795,677 | + | C1H1g01569 | C2H1g03691 | LOC_Os01g08690 | Os01g0182500 | - | Detail |
| CX1g006236 | 1:3,798,023-3,804,558 | - | C1H1g31395 | C2H1g22882 | LOC_Os01g08700 | Os01g0182600 | - | Detail |
| CX1g007148 | 1:3,815,826-3,822,959 | - | C1H1g26932 | C2H1g00342 | LOC_Os01g08710 | Os01g0182700 | OsWRKY102 | Detail |
| CX1g003782 | 1:3,828,612-3,846,626 | + | C1H1g19772 | C2H1g11324 | LOC_Os01g08750 | Os01g0182900 | - | Detail |
| CX1g000301 | 1:3,848,886-3,850,742 | + | C1H1g02231 | C2H1g13544 | LOC_Os01g08760 | Os01g0183000 | - | Detail |
| CX1g000793 | 1:3,851,997-3,855,753 | + | C1H1g31443 | C2H1g26288 | LOC_Os01g08770 | Os01g0183100 | - | Detail |
| CX1g007243 | 1:3,856,802-3,861,200 | - | C1H1g26343 | C2H1g17275 | LOC_Os01g08780 | Os01g0183300 | - | Detail |
| CX1g001420 | 1:3,868,884-3,869,645 | + | - | C2H1g04178 | LOC_Os01g08790 | Os01g0183400 | OsNF-YC13 | Detail |
| CX1g000827 | 1:3,870,831-3,872,479 | + | C1H1g28662 | C2H1g06833 | LOC_Os01g08800 | Os01g0183500 | - | Detail |
| CX1g003927 | 1:3,874,485-3,876,011 | + | C1H1g28662 | C2H1g13017 | LOC_Os01g08810 | Os01g0183600 | - | Detail |
| CX1g000642 | 1:3,877,779-3,878,192 | - | C1H1g05359 | C2H1g27975 | LOC_Os01g08814 | Os01g0183633 | - | Detail |
| CX1g003359 | 1:3,882,870-3,884,772 | - | C1H1g07821 | C2H1g27122 | LOC_Os01g08820 | Os01g0218800 | - | Detail |
| CX1g001853 | 1:3,887,760-3,888,812 | + | C1H1g01391 | C2H1g12240 | LOC_Os01g08830 | Os01g0183800 | - | Detail |
| CX1g004917 | 1:3,889,343-3,889,885 | + | C1H1g01391 | C2H1g25026 | LOC_Os01g08840 | Os01g0183850 | - | Detail |