| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g23443 | 4:12,308,220-12,309,013 | + | C2H4g17585 | CX4g034186 | LOC_Os04g25140 | Os04g0317300 | - | Detail |
| C1H4g17455 | 4:12,309,067-12,314,975 | + | C2H4g17585 | CX4g034186 | LOC_Os04g25140 | Os04g0317300 | - | Detail |
| C1H4g03222 | 4:12,436,936-12,439,392 | - | C2H4g12683 | CX4g036139 | LOC_Os04g26010 | - | - | Detail |
| C1H4g27437 | 4:12,454,799-12,458,121 | + | C2H4g06583 | - | LOC_Os04g25360 | Os04g0319600 | - | Detail |
| C1H4g01135 | 4:12,459,417-12,460,937 | + | C2H4g27440 | CX4g032327 | LOC_Os04g25980 | Os04g0319700 | - | Detail |
| C1H4g27404 | 4:12,470,362-12,471,867 | + | C2H4g14364 | CX4g036582 | LOC_Os04g25380 | Os04g0319800 | - | Detail |
| C1H4g14460 | 4:12,472,624-12,476,837 | - | C2H4g16249 | CX4g034067 | - | Os04g0320000 | - | Detail |
| C1H4g11765 | 4:12,476,969-12,481,656 | - | C2H4g16249 | CX4g034067 | LOC_Os04g25960 | Os04g0320000 | - | Detail |
| C1H4g08601 | 4:12,492,663-12,497,982 | + | C2H4g13198 | CX4g034663 | LOC_Os04g25400 | Os04g0320100 | OsHCAR | Detail |
| C1H4g12613 | 4:12,498,674-12,502,234 | - | C2H4g23070 | CX4g033316 | LOC_Os04g25410 | Os04g0320200 | - | Detail |
| C1H4g07570 | 4:12,527,270-12,528,840 | - | C2H4g15158 | CX4g036503 | LOC_Os04g25440 | Os04g0320700 | - | Detail |
| C1H4g16139 | 4:12,539,902-12,541,760 | + | C2H4g21449 | CX4g034511 | LOC_Os04g25490 | Os04g0320700 | - | Detail |
| C1H4g05580 | 4:12,556,306-12,556,812 | + | C2H4g08941 | CX4g034960 | LOC_Os04g25540 | Os04g0321500 | mtRPL27a, S28 | Detail |
| C1H4g01277 | 4:12,558,301-12,564,058 | + | C2H4g14101 | - | - | - | - | Detail |
| C1H4g13430 | 4:12,564,243-12,568,920 | - | C2H4g20494 | CX4g033520 | LOC_Os04g25560 | Os04g0321700 | - | Detail |
| C1H4g19422 | 4:12,572,438-12,573,055 | - | C2H4g04631 | CX4g035269 | LOC_Os04g25570 | Os04g0609600 | - | Detail |
| C1H4g03787 | 4:12,575,830-12,578,949 | - | C2H4g15716 | CX4g031567 | LOC_Os04g25570 | Os04g0321800 | - | Detail |
| C1H4g12679 | 4:12,625,850-12,626,672 | - | - | - | - | - | - | Detail |
| C1H4g31212 | 4:12,626,446-12,626,691 | + | - | - | - | - | - | Detail |
| C1H4g31637 | 4:12,661,204-12,661,521 | + | C2H4g26903 | CX4g034246 | - | Os04g0334825 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX10g008111 | 10:2,805,769-2,806,017 | + | - | - | - | - | - | Detail |
| CX10g008591 | 10:2,837,111-2,838,053 | - | C1H10g00874 | C2H10g18650 | LOC_Os10g05600 | Os10g0146200 | - | Detail |
| CX10g009304 | 10:2,846,542-2,846,751 | - | - | - | LOC_Os10g33950 | - | - | Detail |
| CX10g007407 | 10:2,867,471-2,869,013 | + | C1H10g23527 | C2H10g21335 | LOC_Os10g05660 | Os10g0147200 | - | Detail |
| CX10g007641 | 10:2,874,413-2,874,568 | - | - | - | - | - | - | Detail |
| CX10g009036 | 10:2,874,924-2,877,470 | + | C1H10g16888 | C2H10g09662 | LOC_Os10g02650 | Os10g0147250 | - | Detail |
| CX10g008367 | 10:2,880,935-2,881,090 | + | - | - | - | - | - | Detail |
| CX10g009754 | 10:2,882,824-2,888,398 | - | C1H10g07982 | C2H10g02858 | LOC_Os10g05690 | Os10g0147400 | - | Detail |
| CX10g007469 | 10:2,902,952-2,903,299 | + | C1H10g07248 | C2H10g29283 | LOC_Os10g05720 | Os10g0148000 | OsLTPd11, OsLTP6, OsLtpVI.3, OsDIL, DIL | Detail |
| CX10g008715 | 10:2,904,683-2,906,641 | - | C1H10g18099 | C2H10g14866 | LOC_Os10g05730 | Os10g0147900 | - | Detail |
| CX10g010478 | 10:2,917,110-2,922,368 | - | C1H10g17041 | C2H10g14004 | LOC_Os10g05750 | Os10g0148100 | OsPRP3 | Detail |
| CX10g007907 | 10:2,934,362-2,936,109 | - | C1H10g07673 | C2H10g23042 | LOC_Os10g05780 | Os10g0148400 | - | Detail |
| CX10g008195 | 10:2,946,137-2,954,165 | - | C1H10g25735 | C2H10g08456 | LOC_Os10g05800 | Os10g0148800 | - | Detail |
| CX10g008665 | 10:3,034,024-3,034,873 | + | C1H10g28832 | C2H10g06646 | LOC_Os10g05980 | Os10g0150600 | - | Detail |
| CX10g008891 | 10:3,038,013-3,039,054 | + | C1H10g15553 | C2H10g24053 | LOC_Os10g05990 | Os10g0150700 | - | Detail |
| CX10g009504 | 10:3,047,459-3,048,267 | + | C1H10g09385 | C2H10g24226 | LOC_Os10g06000 | Os10g0150800 | - | Detail |
| CX10g007524 | 10:3,051,519-3,051,701 | + | C1H10g05250 | - | - | - | - | Detail |
| CX10g008090 | 10:3,067,988-3,068,263 | - | - | - | - | - | - | Detail |
| CX10g009700 | 10:3,074,748-3,074,918 | - | - | - | LOC_Os01g10030 | Os01g0196800 | - | Detail |
| CX10g007297 | 10:3,079,388-3,079,585 | - | - | - | - | - | - | Detail |