| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H3g20719 | 3:12,657,846-12,662,011 | + | C1H3g00297 | CX3g029824 | LOC_Os03g25110 | Os03g0366700 | - | Detail |
| C2H3g16161 | 3:12,663,669-12,666,069 | - | C1H3g09693 | CX3g026720 | LOC_Os03g25120 | Os03g0366800 | OsHsfB4d | Detail |
| C2H3g05889 | 3:12,680,107-12,690,528 | + | C1H3g11212 | CX3g030531 | LOC_Os03g25140 | Os03g0367000 | - | Detail |
| C2H3g05330 | 3:12,699,863-12,706,390 | + | C1H3g27498 | CX3g026873 | LOC_Os03g25150 | Os03g0367200 | - | Detail |
| C2H3g27128 | 3:12,728,251-12,733,718 | + | C1H3g16020 | CX3g026804 | LOC_Os03g25260 | Os03g0367800 | - | Detail |
| C2H3g07803 | 3:12,737,903-12,739,716 | + | C1H3g25920 | CX3g026151 | LOC_Os03g25270 | Os03g0367900 | - | Detail |
| C2H3g22531 | 3:12,741,090-12,742,166 | - | C1H3g11101 | CX3g025169 | LOC_Os03g25300 | Os03g0368300 | - | Detail |
| C2H3g13125 | 3:12,753,395-12,753,733 | + | - | - | - | - | - | Detail |
| C2H3g20896 | 3:12,754,708-12,755,789 | + | - | - | LOC_Os03g25314 | - | - | Detail |
| C2H3g27289 | 3:12,759,905-12,761,668 | + | C1H3g13259 | CX3g025674 | LOC_Os03g25320 | Os03g0368300 | - | Detail |
| C2H3g12026 | 3:12,771,516-12,772,610 | + | C1H3g26852 | CX3g027878 | LOC_Os03g25330 | Os03g0368900 | - | Detail |
| C2H3g16356 | 3:12,779,596-12,781,116 | + | C1H3g17834 | CX3g025535 | LOC_Os03g25340 | Os03g0369000 | - | Detail |
| C2H3g01197 | 3:12,790,603-12,791,049 | + | C1H3g18190 | - | LOC_Os03g25350 | Os03g0369100 | OsLTPL36, OsCIP1 | Detail |
| C2H3g22819 | 3:12,793,639-12,795,020 | + | C1H3g18951 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C2H3g30332 | 3:12,808,380-12,812,544 | + | - | CX8g053307 | - | - | - | Detail |
| C2H3g12054 | 3:12,815,156-12,816,297 | + | C1H3g18951 | CX3g024959 | LOC_Os03g25360 | Os03g0369000 | - | Detail |
| C2H3g12152 | 3:12,821,652-12,822,789 | + | C1H3g00052 | CX3g027308 | LOC_Os03g25370 | Os03g0369000 | - | Detail |
| C2H3g10905 | 3:12,826,088-12,826,663 | + | - | - | - | Os03g0369600 | - | Detail |
| C2H3g04844 | 3:12,829,824-12,831,377 | + | C1H3g00982 | CX3g030217 | LOC_Os03g25380 | Os03g0369700 | - | Detail |
| C2H3g02553 | 3:12,831,824-12,834,946 | - | C1H3g26552 | CX3g027718 | LOC_Os03g25390 | Os03g0369800 | OsNPSN12 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003248 | 1:37,856,761-37,857,176 | - | - | - | - | Os01g0967400 | - | Detail |
| CX1g006465 | 1:37,864,380-37,865,163 | - | C1H1g28259 | C2H1g23181 | - | - | - | Detail |
| CX1g002517 | 1:37,871,909-37,872,061 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g002939 | 1:37,878,370-37,882,040 | + | C1H1g13352 | C2H1g06230 | LOC_Os01g73670 | Os01g0967800 | - | Detail |
| CX1g005310 | 1:37,883,120-37,886,905 | + | C1H1g07633 | C2H1g07305 | LOC_Os01g73680 | Os01g0967900 | - | Detail |
| CX1g006659 | 1:37,887,646-37,890,788 | - | C1H1g14048 | C2H1g24781 | LOC_Os01g73690 | Os01g0968000 | - | Detail |
| CX1g001860 | 1:37,891,828-37,892,897 | - | C1H1g07671 | C2H1g19836 | LOC_Os01g73700 | Os01g0968100 | - | Detail |
| CX1g001112 | 1:37,895,898-37,897,004 | - | C1H1g25633 | C2H1g12288 | LOC_Os01g73710 | Os01g0968300 | - | Detail |
| CX1g005452 | 1:37,898,299-37,899,374 | + | C1H1g15511 | C2H1g30656 | LOC_Os01g73720 | Os01g0968300 | - | Detail |
| CX1g004852 | 1:37,902,597-37,903,714 | + | C1H1g06129 | C2H1g12190 | LOC_Os01g73730 | Os01g0968400 | - | Detail |
| CX1g005277 | 1:37,904,355-37,914,836 | + | C1H1g20404 | C2H1g06476 | LOC_Os01g73760 | Os01g0968700 | - | Detail |
| CX1g003828 | 1:37,916,243-37,916,908 | + | C1H1g08742 | C2H1g00754 | LOC_Os01g73770 | Os01g0968800 | OsDREB1F | Detail |
| CX1g004460 | 1:37,920,344-37,920,562 | - | - | - | - | - | - | Detail |
| CX1g003644 | 1:37,925,463-37,927,014 | - | C1H1g28424 | C2H1g09238 | LOC_Os01g73780 | Os01g0969000 | - | Detail |
| CX1g006205 | 1:37,928,129-37,930,927 | - | C1H1g31794 | C2H1g20740 | LOC_Os01g73790 | Os01g0969100 | - | Detail |
| CX1g003584 | 1:37,942,651-37,945,625 | + | C1H1g01507 | C2H1g09544 | LOC_Os01g73880 | Os01g0970400 | - | Detail |
| CX1g002862 | 1:37,947,872-37,949,168 | + | C1H1g08350 | C2H1g13571 | LOC_Os01g73890 | Os01g0970500 | OsTFIIAgamma1, OsTFIIAγ1 | Detail |
| CX1g006271 | 1:37,949,879-37,953,306 | - | C1H1g18423 | C2H1g20677 | LOC_Os01g73900 | Os01g0970600 | OsRH58 | Detail |
| CX1g001477 | 1:37,954,492-37,956,724 | - | C1H1g08408 | C2H1g02029 | LOC_Os01g73910 | Os01g0970700 | - | Detail |
| CX1g001068 | 1:37,959,071-37,959,310 | + | C1H1g29874 | - | LOC_Os01g73940 | Os01g0971000 | - | Detail |