| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g30819 | 3:8,770,141-8,774,526 | + | C2H3g05135 | CX3g029393 | LOC_Os03g17740 | Os03g0286300 | - | Detail |
| C1H3g23357 | 3:8,776,012-8,778,687 | - | C2H3g11924 | CX3g028814 | LOC_Os03g17760 | Os03g0286500 | - | Detail |
| C1H3g16747 | 3:8,787,399-8,790,131 | + | C2H3g28874 | CX3g028365 | LOC_Os03g17780 | Os03g0286800 | - | Detail |
| C1H3g27086 | 3:8,791,690-8,791,976 | - | C2H3g08715 | CX3g026690 | LOC_Os03g17790 | Os03g0286900 | OsRCI2-5 | Detail |
| C1H3g29184 | 3:8,795,155-8,797,094 | - | C2H3g22847 | CX3g030677 | LOC_Os03g17800 | Os03g0287100 | OsPITPα, OsPITPalpha | Detail |
| C1H3g05095 | 3:8,804,615-8,805,433 | - | C2H3g20359 | CX3g026247 | LOC_Os03g17810 | Os03g0287400 | - | Detail |
| C1H3g02097 | 3:8,819,749-8,825,527 | + | C2H3g27675 | CX3g029968 | LOC_Os03g17840 | Os03g0287700 | - | Detail |
| C1H3g16177 | 3:8,830,806-8,835,037 | + | C2H3g09757 | CX3g025194 | LOC_Os03g17850 | Os03g0287800 | OsGT43B | Detail |
| C1H3g12393 | 3:8,837,212-8,839,228 | - | C2H3g14774 | CX3g027864 | LOC_Os03g17860 | Os03g0287900 | - | Detail |
| C1H3g31312 | 3:8,841,681-8,842,370 | + | C2H3g27564 | CX3g028664 | LOC_Os03g17870 | Os03g0288000 | - | Detail |
| C1H3g00118 | 3:8,849,777-8,854,775 | + | C2H3g23362 | CX3g028015 | LOC_Os03g17900 | Os03g0288300 | - | Detail |
| C1H3g25481 | 3:8,856,043-8,858,066 | + | C2H3g17267 | CX3g026722 | LOC_Os03g17910 | Os03g0288400 | - | Detail |
| C1H3g14781 | 3:8,858,426-8,861,725 | + | C2H3g21876 | CX3g027011 | LOC_Os03g17920 | Os03g0288500 | - | Detail |
| C1H3g27293 | 3:8,864,540-8,867,759 | + | C2H3g27997 | CX3g030831 | LOC_Os03g17930 | Os03g0288600 | - | Detail |
| C1H3g19930 | 3:8,868,689-8,870,597 | - | C2H3g11409 | CX3g027560 | LOC_Os03g17940 | Os03g0288700 | - | Detail |
| C1H3g10814 | 3:8,872,487-8,876,594 | + | C2H3g03519 | CX3g029037 | LOC_Os03g17950 | Os03g0288800 | - | Detail |
| C1H3g03942 | 3:8,876,970-8,879,480 | + | C2H3g04708 | CX3g026332 | LOC_Os03g17960 | Os03g0288900 | - | Detail |
| C1H3g28173 | 3:8,884,078-8,889,386 | + | C2H3g30489 | CX3g025870 | LOC_Os03g17980 | Os03g0289100 | - | Detail |
| C1H3g16506 | 3:8,893,468-8,895,978 | + | C2H3g00076 | CX3g029623 | LOC_Os03g17990 | Os03g0289200 | - | Detail |
| C1H3g21351 | 3:8,899,345-8,902,878 | + | C2H3g12597 | CX3g025090 | LOC_Os03g18010 | Os03g0289300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g005676 | 1:37,742,784-37,747,406 | + | C1H1g11491 | C2H1g27888 | LOC_Os01g73460 | Os01g0965500 | - | Detail |
| CX1g002124 | 1:37,751,286-37,753,422 | - | C1H1g28339 | C2H1g22580 | LOC_Os01g73470 | Os01g0965600 | - | Detail |
| CX1g001136 | 1:37,753,620-37,759,868 | + | C1H1g14383 | C2H1g02795 | LOC_Os01g73480 | Os01g0965700 | - | Detail |
| CX1g005127 | 1:37,761,512-37,762,156 | - | - | - | - | - | - | Detail |
| CX1g005377 | 1:37,763,764-37,769,869 | - | C1H1g05530 | C2H1g19024 | LOC_Os01g73500 | Os01g0965900 | - | Detail |
| CX1g005607 | 1:37,772,397-37,776,170 | - | C1H1g24181 | C2H1g03793 | LOC_Os01g73514 | Os01g0966000 | - | Detail |
| CX1g004906 | 1:37,780,199-37,790,028 | + | C1H1g27530 | C2H1g00287 | LOC_Os01g73530 | Os01g0966100 | - | Detail |
| CX1g001939 | 1:37,791,804-37,792,486 | - | C1H1g15049 | C2H1g04276 | LOC_Os01g73540 | Os01g0966200 | - | Detail |
| CX1g000396 | 1:37,792,688-37,795,946 | + | C1H1g11706 | C2H1g21243 | LOC_Os01g73550 | Os01g0966300 | - | Detail |
| CX1g003894 | 1:37,796,707-37,799,501 | - | C1H1g09710 | C2H1g19222 | LOC_Os01g73560 | Os01g0966400 | - | Detail |
| CX1g003991 | 1:37,799,834-37,802,341 | + | C1H1g29113 | C2H1g20215 | LOC_Os01g73570 | Os01g0966500 | - | Detail |
| CX1g002632 | 1:37,804,417-37,808,106 | + | C1H1g18562 | C2H1g12651 | LOC_Os01g73580 | Os01g0966700 | - | Detail |
| CX1g000483 | 1:37,812,465-37,814,572 | - | C1H1g08379 | C2H1g02048 | LOC_Os01g73590 | Os01g0966900 | OsPLT2 | Detail |
| CX1g006281 | 1:37,822,397-37,826,093 | + | C1H1g18562 | C2H1g12651 | LOC_Os01g73580 | Os01g0966700 | - | Detail |
| CX1g005261 | 1:37,830,665-37,832,752 | - | C1H1g08379 | C2H1g02048 | LOC_Os01g73590 | Os01g0966900 | OsPLT2 | Detail |
| CX1g007258 | 1:37,839,565-37,847,057 | + | C1H1g07022 | C2H1g29070 | LOC_Os01g73620 | Os01g0967100 | - | Detail |
| CX1g006418 | 1:37,847,887-37,848,747 | + | C1H1g18920 | C2H1g04197 | LOC_Os01g73630 | Os01g0967200 | - | Detail |
| CX1g000716 | 1:37,852,782-37,853,135 | - | C1H11g24372 | C2H10g13734 | LOC_Os12g03380 | - | - | Detail |
| CX1g005510 | 1:37,853,035-37,853,199 | + | - | - | - | Os01g0781600 | - | Detail |
| CX1g003983 | 1:37,854,272-37,855,033 | + | - | - | LOC_Os01g73640 | Os01g0967300 | OsLCD3 | Detail |