| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H5g08495 | 5:19,773,722-19,776,309 | - | C1H5g12837 | CX5g037318 | LOC_Os05g40070 | Os05g0478700 | - | Detail |
| C2H5g25461 | 5:19,792,023-19,793,106 | - | C1H5g11113 | CX5g037363 | LOC_Os05g40080 | Os05g0478800 | OsWRKY54 | Detail |
| C2H5g13879 | 5:19,797,640-19,799,823 | - | C1H5g02682 | - | - | - | - | Detail |
| C2H5g10570 | 5:19,813,215-19,814,259 | - | C1H5g26849 | CX5g037363 | LOC_Os05g40080 | Os05g0478800 | OsWRKY54 | Detail |
| C2H5g08801 | 5:19,824,830-19,829,526 | - | C1H5g06063 | CX5g039436 | LOC_Os05g40150 | Os05g0479700 | - | Detail |
| C2H5g20369 | 5:19,831,696-19,834,299 | + | C1H5g29758 | - | LOC_Os05g40160 | Os05g0479800 | - | Detail |
| C2H5g10573 | 5:19,837,555-19,838,663 | - | C1H5g04289 | CX5g040657 | LOC_Os05g40170 | Os05g0479900 | - | Detail |
| C2H5g25386 | 5:19,840,325-19,843,318 | + | C1H5g15872 | CX5g038549 | LOC_Os05g40180 | Os05g0480000 | - | Detail |
| C2H5g29302 | 5:19,843,477-19,845,519 | - | C1H5g28899 | CX5g040025 | LOC_Os05g40190 | Os05g0480200 | - | Detail |
| C2H5g01124 | 5:19,849,399-19,854,679 | - | C1H5g23691 | CX5g039013 | LOC_Os05g40200 | Os05g0480400 | - | Detail |
| C2H5g07858 | 5:19,865,382-19,869,655 | - | C1H5g19892 | CX5g037523 | LOC_Os05g40220 | Os05g0480600 | - | Detail |
| C2H5g15641 | 5:19,874,856-19,876,456 | + | C1H5g06303 | CX5g037415 | LOC_Os05g40230 | Os05g0480700 | - | Detail |
| C2H5g14285 | 5:19,878,751-19,880,312 | + | C1H5g11255 | CX5g039945 | LOC_Os05g40240 | Os05g0480800 | - | Detail |
| C2H5g19268 | 5:19,884,992-19,886,441 | + | C1H5g11255 | CX5g037094 | LOC_Os05g40250 | Os05g0480800 | - | Detail |
| C2H5g11353 | 5:19,887,663-19,890,621 | + | C1H5g24027 | CX5g037040 | LOC_Os05g40260 | Os05g0481000 | - | Detail |
| C2H5g07339 | 5:19,898,249-19,907,663 | + | C1H5g02182 | CX5g038324 | LOC_Os05g40270 | Os05g0481100 | - | Detail |
| C2H5g09907 | 5:19,908,035-19,911,993 | - | C1H5g03756 | CX5g039343 | LOC_Os05g40280 | Os05g0481400 | - | Detail |
| C2H5g20428 | 5:19,923,760-19,927,541 | - | C1H5g03902 | CX5g038848 | LOC_Os05g40290 | Os05g0481500 | - | Detail |
| C2H5g27797 | 5:19,941,391-19,941,709 | + | C1H5g10469 | CX5g036753 | LOC_Os05g40300 | Os05g0481600 | - | Detail |
| C2H5g06900 | 5:19,944,440-19,947,150 | - | C1H5g24805 | CX5g037459 | LOC_Os05g40310 | Os05g0481700 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |