| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H4g24662 | 4:30,367,835-30,368,107 | - | C1H4g08597 | CX4g036614 | LOC_Os04g58940 | Os04g0686100 | - | Detail |
| C2H4g20786 | 4:30,372,186-30,379,514 | - | C1H4g06869 | CX4g033434 | LOC_Os04g58960 | Os04g0686200 | OsRLR4 | Detail |
| C2H4g06556 | 4:30,388,698-30,390,451 | - | C1H4g27993 | CX4g033160 | LOC_Os04g58980 | Os04g0686300 | - | Detail |
| C2H4g09974 | 4:30,391,221-30,395,140 | - | C1H4g20559 | CX4g034151 | LOC_Os04g58990 | Os04g0686500 | - | Detail |
| C2H4g02812 | 4:30,395,867-30,402,331 | - | C1H4g22211 | CX4g032982 | LOC_Os04g59000 | Os04g0686650 | - | Detail |
| C2H4g14334 | 4:30,411,446-30,412,687 | - | - | CX4g032332 | LOC_Os04g59010 | Os04g0686700 | - | Detail |
| C2H4g23629 | 4:30,417,623-30,418,249 | + | - | CX4g035004 | LOC_Os04g59020 | Os04g0686800 | OsVTL5 | Detail |
| C2H4g05730 | 4:30,423,735-30,427,457 | - | C1H4g16557 | CX4g033455 | LOC_Os04g59040 | Os04g0687100 | - | Detail |
| C2H4g24423 | 4:30,436,413-30,437,110 | + | C1H4g25779 | CX4g031409 | LOC_Os04g59050 | Os04g0687200 | - | Detail |
| C2H4g17341 | 4:30,438,345-30,441,545 | - | C1H4g30754 | CX4g033457 | LOC_Os04g59060 | Os04g0687300 | OsDjC46 | Detail |
| C2H4g17357 | 4:30,450,174-30,453,017 | + | C1H4g02340 | CX4g032584 | LOC_Os04g59120 | Os04g0687800 | - | Detail |
| C2H4g08207 | 4:30,458,707-30,462,673 | + | C1H4g28490 | CX4g034877 | LOC_Os04g59130 | Os04g0687900 | - | Detail |
| C2H4g18008 | 4:30,465,310-30,466,578 | + | - | CX4g032282 | LOC_Os04g59140 | Os04g0688000 | - | Detail |
| C2H4g15410 | 4:30,470,804-30,472,082 | - | C1H4g10712 | CX4g033823 | LOC_Os04g59150 | Os04g0688100 | - | Detail |
| C2H4g21064 | 4:30,476,422-30,477,629 | - | C1H4g16364 | CX4g033823 | LOC_Os04g59160 | Os04g0688200 | - | Detail |
| C2H4g21084 | 4:30,480,100-30,481,287 | - | C1H4g06961 | CX4g033823 | LOC_Os04g59190 | Os04g0688300 | - | Detail |
| C2H4g27045 | 4:30,485,275-30,486,722 | - | C1H4g31633 | CX4g033823 | LOC_Os04g59200 | Os04g0688500 | - | Detail |
| C2H4g21882 | 4:30,493,050-30,494,150 | - | C1H4g24789 | CX4g033823 | LOC_Os04g59210 | Os04g0688600 | - | Detail |
| C2H4g02467 | 4:30,497,343-30,498,439 | - | C1H4g27691 | CX4g033823 | LOC_Os04g59260 | Os04g0689000 | - | Detail |
| C2H4g27148 | 4:30,504,008-30,506,893 | - | C1H4g07402 | CX4g032771 | LOC_Os04g59310 | Os04g0689300 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |