| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g04874 | 1:33,341,086-33,343,962 | + | C1H1g22072 | CX1g000896 | LOC_Os01g65110 | Os01g0871500 | - | Detail |
| C2H1g16882 | 1:33,346,559-33,348,467 | + | C1H1g21395 | CX1g000896 | LOC_Os01g65110 | Os01g0871600 | POT | Detail |
| C2H1g16169 | 1:33,350,002-33,350,452 | + | C1H1g10480 | CX1g000896 | LOC_Os01g65120 | Os01g0871700 | SBM1 | Detail |
| C2H1g03879 | 1:33,350,513-33,351,855 | + | C1H1g15082 | CX1g000896 | LOC_Os01g65150 | Os01g0872400 | - | Detail |
| C2H1g24640 | 1:33,353,062-33,353,514 | + | C1H1g26845 | CX1g000896 | LOC_Os01g65130 | Os01g0871800 | - | Detail |
| C2H1g16189 | 1:33,358,472-33,359,840 | + | C1H1g24591 | CX1g000896 | LOC_Os01g65140 | Os01g0871900 | - | Detail |
| C2H1g00496 | 1:33,361,441-33,363,488 | + | C1H1g24591 | CX1g000896 | LOC_Os01g65150 | Os01g0872000 | - | Detail |
| C2H1g08454 | 1:33,366,142-33,369,931 | + | C1H1g22374 | CX1g000896 | LOC_Os01g65169 | Os01g0872100 | - | Detail |
| C2H1g07183 | 1:33,371,165-33,371,657 | + | C1H1g28026 | CX1g000896 | LOC_Os01g65190 | Os01g0872300 | - | Detail |
| C2H1g02336 | 1:33,372,344-33,373,580 | + | C1H1g08521 | CX1g000896 | LOC_Os01g65190 | Os01g0872400 | - | Detail |
| C2H1g29313 | 1:33,373,608-33,373,812 | + | C1H1g08521 | - | LOC_Os01g65150 | Os01g0872450 | - | Detail |
| C2H1g29025 | 1:33,374,798-33,377,524 | + | C1H1g11333 | CX1g000896 | LOC_Os01g65200 | Os01g0872500 | OsNPF5.16 | Detail |
| C2H1g21963 | 1:33,377,719-33,380,955 | + | C1H1g07629 | CX1g000896 | LOC_Os01g65210 | Os01g0872600 | - | Detail |
| C2H1g20570 | 1:33,382,199-33,384,144 | + | C1H1g09821 | CX1g005372 | LOC_Os01g65210 | - | - | Detail |
| C2H1g01785 | 1:33,385,386-33,393,282 | - | C1H1g00390 | CX1g004185 | LOC_Os01g65220 | Os01g0872700 | - | Detail |
| C2H1g08678 | 1:33,393,874-33,397,980 | - | C1H1g04115 | CX1g005034 | LOC_Os01g65230 | Os01g0872800 | - | Detail |
| C2H1g08988 | 1:33,416,235-33,418,418 | + | C1H1g02581 | CX1g002038 | LOC_Os01g65310 | Os01g0873700 | - | Detail |
| C2H1g14444 | 1:33,419,117-33,425,914 | - | C1H1g07269 | CX1g005957 | LOC_Os01g65320 | Os01g0873800 | - | Detail |
| C2H1g05655 | 1:33,427,042-33,434,346 | - | C1H1g13757 | CX1g003528 | LOC_Os01g65330 | Os01g0873900 | - | Detail |
| C2H1g20969 | 1:33,434,632-33,438,390 | - | C1H1g10398 | - | - | - | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |