| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15170 | 5:20,646,146-20,648,964 | + | C2H5g29168 | CX5g039522 | - | - | - | Detail |
| C1H5g30650 | 5:20,654,270-20,659,494 | + | C2H5g01065 | CX5g037054 | LOC_Os05g43610 | Os05g0512000 | - | Detail |
| C1H5g28010 | 5:20,661,767-20,663,400 | + | C2H5g14988 | CX5g038702 | LOC_Os05g43590 | Os05g0511800 | - | Detail |
| C1H5g12550 | 5:20,664,428-20,667,136 | - | C2H5g08259 | CX5g037699 | LOC_Os05g43582 | Os05g0511700 | - | Detail |
| C1H5g02902 | 5:20,668,097-20,670,188 | - | C2H5g13482 | CX5g037939 | LOC_Os05g43576 | Os05g0511500 | - | Detail |
| C1H5g20408 | 5:20,673,211-20,673,846 | - | C2H10g16136 | - | - | - | - | Detail |
| C1H5g23395 | 5:20,675,906-20,683,777 | + | C2H5g00019 | CX5g039648 | LOC_Os05g43570 | Os05g0511400 | - | Detail |
| C1H5g31163 | 5:20,684,387-20,693,882 | + | C2H5g01181 | CX5g038876 | LOC_Os05g43560 | Os05g0511300 | - | Detail |
| C1H5g31608 | 5:20,696,464-20,697,765 | - | C2H5g05981 | CX5g038504 | LOC_Os05g43550 | Os05g0511050 | - | Detail |
| C1H5g23826 | 5:20,702,998-20,705,827 | - | C2H5g08192 | CX5g036939 | LOC_Os05g43540 | Os05g0511000 | - | Detail |
| C1H5g22389 | 5:20,714,273-20,714,908 | + | C2H10g16136 | - | - | - | - | Detail |
| C1H5g01984 | 5:20,715,199-20,718,871 | + | C2H5g06890 | CX5g041060 | LOC_Os05g43530 | Os05g0510800 | OsCSLC7 | Detail |
| C1H5g13246 | 5:20,720,651-20,724,353 | - | C2H5g29614 | CX5g039667 | LOC_Os05g43520 | Os05g0510700 | - | Detail |
| C1H5g03553 | 5:20,727,482-20,728,000 | + | C2H5g06953 | CX5g040965 | LOC_Os05g43640 | Os05g0512100 | - | Detail |
| C1H5g21736 | 5:20,730,709-20,733,478 | + | C2H5g26211 | CX5g040742 | LOC_Os05g43650 | Os05g0512200 | - | Detail |
| C1H5g03468 | 5:20,736,103-20,736,477 | - | C2H5g29981 | - | LOC_Os05g43660 | Os05g0512301 | - | Detail |
| C1H5g20040 | 5:20,739,046-20,740,377 | - | C2H5g13083 | CX5g040726 | LOC_Os05g43670 | Os05g0512400 | - | Detail |
| C1H5g16395 | 5:20,740,414-20,740,625 | - | - | - | - | - | - | Detail |
| C1H5g16936 | 5:20,741,445-20,745,241 | - | C2H5g21303 | - | LOC_Os05g43680 | Os05g0512500 | OsMRGBP | Detail |
| C1H5g08173 | 5:20,749,479-20,751,961 | + | C2H5g03611 | CX5g037888 | LOC_Os05g43690 | Os05g0512600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |