| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g12779 | 1:19,411,093-19,413,091 | - | C2H1g19363 | CX1g000948 | LOC_Os01g38610 | Os01g0566800 | - | Detail |
| C1H1g22416 | 1:19,423,268-19,428,668 | - | C2H1g12854 | CX1g003127 | LOC_Os01g38620 | Os01g0566900 | - | Detail |
| C1H1g14571 | 1:19,437,683-19,438,120 | - | - | CX1g003570 | LOC_Os01g38660 | Os01g0567400 | - | Detail |
| C1H1g20878 | 1:19,441,981-19,443,974 | + | C2H1g22209 | CX1g006382 | LOC_Os01g38670 | Os01g0567500 | OsMST8 | Detail |
| C1H1g27966 | 1:19,446,029-19,447,890 | - | C2H1g08093 | CX1g003104 | LOC_Os01g38680 | Os01g0567600 | OsMST7, OsSTP7 | Detail |
| C1H1g10384 | 1:19,495,740-19,502,152 | - | C2H1g28975 | CX1g002815 | LOC_Os01g38850 | Os01g0568400 | Gnk2RLK-3 | Detail |
| C1H1g11385 | 1:19,516,441-19,519,843 | + | C2H1g22055 | CX1g006699 | LOC_Os01g38880 | Os01g0569200 | - | Detail |
| C1H1g23492 | 1:19,527,486-19,527,704 | + | C2H1g20871 | - | - | - | - | Detail |
| C1H1g16258 | 1:19,544,247-19,551,380 | - | C2H1g08516 | CX1g007140 | LOC_Os01g38910 | Os01g0568800 | Gnk2-K1 | Detail |
| C1H1g21031 | 1:19,589,294-19,594,488 | + | C2H1g24947 | CX1g005732 | LOC_Os01g38950 | Os01g0570500 | - | Detail |
| C1H1g03105 | 1:19,597,408-19,598,319 | - | C2H1g24876 | CX1g006869 | LOC_Os01g38960 | Os01g0570601 | - | Detail |
| C1H1g16555 | 1:19,602,998-19,608,224 | + | C2H1g10120 | CX1g003697 | LOC_Os01g38970 | Os01g0570700 | - | Detail |
| C1H1g05272 | 1:19,610,201-19,613,216 | - | C2H1g26639 | CX1g004643 | LOC_Os01g38980 | Os01g0570800 | OsIQM1 | Detail |
| C1H1g12320 | 1:19,638,183-19,641,939 | + | C2H1g11902 | CX1g004950 | LOC_Os01g38990 | Os01g0571000 | - | Detail |
| C1H1g21409 | 1:19,642,537-19,647,264 | - | C2H1g27305 | CX1g002465 | LOC_Os01g39000 | Os01g0571100 | - | Detail |
| C1H1g07390 | 1:19,653,555-19,655,969 | + | C2H1g14300 | CX1g006736 | LOC_Os01g39010 | Os01g0571200 | - | Detail |
| C1H1g19692 | 1:19,659,016-19,661,639 | + | C2H1g16893 | CX1g004092 | LOC_Os01g39020 | Os01g0571300 | OsHsfA7 | Detail |
| C1H1g17261 | 1:19,662,503-19,670,657 | + | C2H1g12280 | CX1g005574 | LOC_Os01g39100 | Os01g0572100 | - | Detail |
| C1H1g00355 | 1:19,671,236-19,672,707 | + | C2H1g12124 | - | - | - | - | Detail |
| C1H1g04588 | 1:19,682,082-19,686,188 | + | C2H1g16877 | CX1g001024 | LOC_Os01g39110 | Os01g0572300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |