| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02356 | 1:19,019,653-19,021,674 | - | C2H1g15114 | CX1g004191 | LOC_Os01g37480 | Os01g0555300 | - | Detail |
| C1H1g21947 | 1:19,026,741-19,027,745 | - | C2H1g15561 | CX1g003072 | LOC_Os01g37490 | Os01g0555600 | - | Detail |
| C1H1g23119 | 1:19,030,574-19,031,990 | - | C2H1g11457 | CX1g002456 | LOC_Os01g37510 | Os01g0555800 | OsPDF1A | Detail |
| C1H1g29178 | 1:19,032,323-19,032,873 | - | - | - | - | - | - | Detail |
| C1H1g05920 | 1:19,034,862-19,035,296 | - | - | - | - | - | - | Detail |
| C1H1g10331 | 1:19,040,878-19,043,959 | - | C2H1g24925 | CX1g007105 | - | Os01g0807000 | - | Detail |
| C1H1g31630 | 1:19,047,261-19,051,396 | + | C2H1g29022 | CX1g005274 | LOC_Os01g37560 | Os01g0556400 | - | Detail |
| C1H1g17519 | 1:19,071,315-19,077,214 | + | C2H1g00425 | CX1g006555 | LOC_Os01g37590 | Os01g0556700 | - | Detail |
| C1H1g00158 | 1:19,078,212-19,079,505 | - | C2H1g12776 | CX1g000936 | LOC_Os01g37600 | Os01g0556800 | - | Detail |
| C1H1g06316 | 1:19,103,589-19,104,473 | - | C2H1g21486 | CX1g003371 | LOC_Os01g37630 | Os01g0557100 | - | Detail |
| C1H1g17066 | 1:19,119,599-19,125,230 | - | C2H1g23763 | CX1g000131 | LOC_Os01g37690 | Os01g0557500 | OsCAX1a | Detail |
| C1H1g26457 | 1:19,155,354-19,161,051 | + | C2H1g06830 | CX1g000875 | LOC_Os01g37760 | Os01g0558200 | - | Detail |
| C1H1g06402 | 1:19,161,473-19,164,760 | - | C2H1g08019 | CX1g000488 | LOC_Os01g37770 | Os01g0558300 | - | Detail |
| C1H1g15919 | 1:19,175,780-19,179,619 | + | C2H1g18167 | CX1g001083 | LOC_Os01g37790 | Os01g0558500 | - | Detail |
| C1H1g24378 | 1:19,180,459-19,183,345 | - | C2H1g19481 | CX1g002871 | LOC_Os01g37800 | Os01g0558600 | - | Detail |
| C1H1g26268 | 1:19,189,472-19,192,644 | - | C2H1g02629 | CX1g000094 | LOC_Os01g37820 | Os01g0558800 | - | Detail |
| C1H1g26154 | 1:19,197,719-19,206,072 | + | C2H1g25024 | CX1g002185 | LOC_Os01g37825 | Os01g0558900 | - | Detail |
| C1H1g23221 | 1:19,206,870-19,211,597 | + | C2H1g22293 | CX1g005822 | LOC_Os01g37832 | Os01g0559000 | - | Detail |
| C1H1g29674 | 1:19,215,337-19,219,492 | + | C2H1g19302 | CX1g000202 | LOC_Os01g37837 | Os01g0559100 | - | Detail |
| C1H1g09716 | 1:19,221,125-19,224,008 | + | C2H1g01229 | CX1g007154 | LOC_Os01g37842 | Os01g0559200 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |