| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g06893 | 9:17,736,809-17,742,515 | - | C2H9g20614 | CX9g055160 | LOC_Os09g36770 | Os09g0538800 | - | Detail |
| C1H9g05351 | 9:17,746,698-17,747,264 | + | - | CX9g055568 | LOC_Os09g36790 | Os09g0539000 | - | Detail |
| C1H9g17651 | 9:17,747,767-17,751,139 | - | C2H9g01552 | CX9g056861 | LOC_Os09g36800 | Os09g0539100 | - | Detail |
| C1H9g23415 | 9:17,752,663-17,757,812 | + | C2H9g21684 | CX9g056453 | LOC_Os09g36810 | Os09g0539200 | - | Detail |
| C1H9g18894 | 9:17,760,325-17,762,943 | + | C2H9g12389 | CX9g057403 | LOC_Os09g36820 | Os09g0539400 | - | Detail |
| C1H9g22954 | 9:17,764,058-17,766,525 | - | C2H9g19569 | CX9g056828 | LOC_Os09g36830 | Os09g0539500 | - | Detail |
| C1H9g17737 | 9:17,772,034-17,772,675 | - | - | CX9g057934 | LOC_Os09g36850 | Os09g0539700 | - | Detail |
| C1H9g21022 | 9:17,774,332-17,776,996 | - | C2H9g22706 | CX9g055116 | LOC_Os09g36860 | Os09g0539800 | - | Detail |
| C1H9g12571 | 9:17,782,090-17,783,577 | + | - | CX9g056698 | LOC_Os09g36870 | Os09g0540300 | - | Detail |
| C1H9g06205 | 9:17,784,256-17,786,071 | - | C2H9g18485 | CX9g056143 | LOC_Os09g36880 | Os09g0540400 | - | Detail |
| C1H9g24059 | 9:17,788,600-17,789,844 | - | - | CX9g056433 | LOC_Os09g36890 | Os09g0540500 | - | Detail |
| C1H9g23063 | 9:17,789,025-17,794,213 | + | C2H9g22888 | CX9g055896 | LOC_Os09g36900 | Os09g0540600 | - | Detail |
| C1H9g23615 | 9:17,806,996-17,807,780 | + | C2H9g26403 | CX9g055766 | LOC_Os09g36910 | Os09g0540800 | BZIP77, OsbZIP77, OsFD1 | Detail |
| C1H9g26475 | 9:17,819,085-17,823,048 | - | C2H9g30227 | CX9g055175 | LOC_Os09g36920 | Os09g0540900 | - | Detail |
| C1H9g19249 | 9:17,828,712-17,830,126 | + | C2H9g19063 | CX9g056388 | LOC_Os09g36930 | Os09g0541000 | - | Detail |
| C1H9g27842 | 9:17,832,035-17,832,708 | - | C2H9g09532 | CX9g057449 | LOC_Os09g36940 | Os09g0541100 | - | Detail |
| C1H9g12978 | 9:17,832,829-17,833,570 | - | C2H9g22675 | - | - | - | - | Detail |
| C1H9g10857 | 9:17,839,442-17,839,846 | + | - | CX9g056802 | LOC_Os09g36960 | Os09g0541300 | - | Detail |
| C1H9g05693 | 9:17,849,381-17,851,389 | - | C2H9g14047 | CX9g055205 | LOC_Os09g36976 | Os09g0541500 | - | Detail |
| C1H9g25058 | 9:17,853,815-17,854,471 | - | C2H9g00965 | CX9g056518 | LOC_Os09g36982 | Os09g0541600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |