| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H6g14902 | 6:22,260,915-22,262,283 | - | C2H6g16429 | CX6g042519 | LOC_Os06g42680 | Os06g0633300 | OsPSK | Detail |
| C1H6g20570 | 6:22,267,256-22,267,783 | + | - | CX6g045359 | LOC_Os06g42690 | Os02g0191600 | OsbZIP16 | Detail |
| C1H6g08858 | 6:22,271,526-22,272,539 | - | C2H6g02871 | CX6g043100 | LOC_Os06g42700 | Os06g0633500 | OsCLR1 | Detail |
| C1H6g31495 | 6:22,275,838-22,279,592 | + | C2H6g16856 | CX6g043204 | LOC_Os06g42720 | Os06g0633800 | - | Detail |
| C1H6g08273 | 6:22,283,595-22,287,581 | + | C2H6g03516 | CX6g044346 | LOC_Os06g42730 | Os02g0190800 | - | Detail |
| C1H6g05219 | 6:22,294,737-22,295,027 | + | C2H6g08594 | CX6g041741 | LOC_Os06g42754 | Os06g0634000 | - | Detail |
| C1H6g28881 | 6:22,296,328-22,298,892 | - | C2H6g16565 | CX6g041375 | LOC_Os06g42770 | Os06g0634100 | - | Detail |
| C1H6g09167 | 6:22,308,371-22,312,412 | - | C2H6g16333 | CX6g044890 | LOC_Os06g42790 | Os06g0634300 | - | Detail |
| C1H6g08903 | 6:22,317,554-22,323,426 | - | C2H6g04917 | CX6g041585 | LOC_Os06g42800 | Os06g0634500 | - | Detail |
| C1H6g26355 | 6:22,327,814-22,332,021 | - | C2H6g16887 | CX6g043858 | LOC_Os06g42810 | Os06g0634600 | - | Detail |
| C1H6g19379 | 6:22,335,691-22,338,380 | - | C2H6g15459 | CX6g045222 | LOC_Os06g42850 | Os06g0635200 | - | Detail |
| C1H6g18504 | 6:22,343,697-22,346,526 | - | C2H6g22536 | CX6g044897 | LOC_Os06g42860 | Os06g0635300 | - | Detail |
| C1H6g13923 | 6:22,354,840-22,357,854 | + | C2H6g23938 | CX6g043700 | LOC_Os06g42920 | Os06g0635700 | - | Detail |
| C1H6g13756 | 6:22,360,829-22,361,449 | + | C2H6g23938 | CX6g043700 | - | - | - | Detail |
| C1H6g19583 | 6:22,378,799-22,382,001 | + | C2H6g30683 | - | LOC_Os06g43000 | Os06g0636100 | - | Detail |
| C1H6g12692 | 6:22,392,103-22,397,252 | - | C2H6g12599 | CX6g043865 | LOC_Os06g43020 | - | - | Detail |
| C1H6g02107 | 6:22,401,126-22,403,504 | + | C2H6g29176 | CX6g045587 | LOC_Os06g43030 | Os06g0636600 | - | Detail |
| C1H6g24093 | 6:22,403,731-22,409,162 | - | C2H6g06703 | CX6g044743 | LOC_Os06g43044 | Os06g0636700 | - | Detail |
| C1H6g23162 | 6:22,412,722-22,413,228 | + | - | CX6g044201 | LOC_Os06g43060 | Os06g0636800 | - | Detail |
| C1H6g28467 | 6:22,424,851-22,425,123 | + | - | CX6g045013 | LOC_Os06g43080 | Os06g0637400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g004833 | 1:3,426,536-3,428,533 | - | C1H1g01247 | C2H1g07226 | LOC_Os01g08120 | Os01g0176300 | - | Detail |
| CX1g005143 | 1:3,431,798-3,436,390 | + | C1H1g22640 | C2H1g17877 | LOC_Os01g08130 | Os01g0176400 | - | Detail |
| CX1g005306 | 1:3,436,867-3,439,820 | - | C1H1g06103 | C2H1g05536 | LOC_Os01g08150 | Os01g0176500 | - | Detail |
| CX1g003794 | 1:3,451,256-3,453,127 | - | C1H4g04023 | - | - | - | - | Detail |
| CX1g006352 | 1:3,455,671-3,457,542 | + | C1H1g03923 | C2H1g25065 | LOC_Os01g08160 | Os01g0176700 | - | Detail |
| CX1g002845 | 1:3,461,228-3,464,503 | + | - | C2H1g28512 | LOC_Os01g08170 | Os01g0176800 | - | Detail |
| CX1g004627 | 1:3,476,785-3,484,554 | + | C1H1g14865 | C2H1g26258 | LOC_Os01g08190 | Os01g0177100 | - | Detail |
| CX1g003518 | 1:3,486,896-3,495,257 | + | C1H1g25960 | C2H1g16195 | LOC_Os01g08200 | Os01g0177200 | - | Detail |
| CX1g003748 | 1:3,504,580-3,505,816 | - | C1H1g22558 | C2H1g03295 | LOC_Os01g08220 | Os01g0177400 | D18, d18-h (d18-I, d18h), dwf15, d25, d18, d18-k, d18-AD, d18-dy, OsGA3ox2, ga3ox2, OsGA3OX2, GA3OX2, GA3ox-2 | Detail |
| CX1g005894 | 1:3,519,748-3,520,365 | + | - | C2H1g21612 | LOC_Os01g07840 | - | - | Detail |
| CX1g001472 | 1:3,520,688-3,521,293 | + | C1H9g14927 | C2H1g21612 | LOC_Os01g07840 | Os06g0474600 | - | Detail |
| CX1g001830 | 1:3,534,418-3,534,588 | + | - | - | - | - | - | Detail |
| CX1g004229 | 1:3,538,788-3,548,233 | - | C1H1g04757 | C2H1g12398 | LOC_Os01g08260 | Os01g0177900 | - | Detail |
| CX1g004531 | 1:3,557,106-3,561,419 | - | C1H1g28750 | C2H1g19074 | LOC_Os01g08270 | Os01g0178000 | - | Detail |
| CX1g004172 | 1:3,563,360-3,566,487 | + | C1H1g30727 | C2H1g18970 | LOC_Os01g08280 | Os01g0178100 | - | Detail |
| CX1g001768 | 1:3,567,829-3,569,772 | + | C1H1g15139 | C2H1g21666 | LOC_Os01g08290 | Os01g0178200 | - | Detail |
| CX1g000809 | 1:3,570,241-3,570,408 | - | - | - | - | - | - | Detail |
| CX1g003276 | 1:3,572,616-3,574,978 | - | C1H1g19644 | C2H1g05074 | LOC_Os01g08310 | Os01g0178400 | - | Detail |
| CX1g003361 | 1:3,585,367-3,586,737 | + | - | C2H1g29886 | LOC_Os01g08330 | Os01g0178600 | OsCDR1 | Detail |
| CX1g004954 | 1:3,594,561-3,596,368 | + | C1H1g10164 | C2H1g00169 | LOC_Os01g08340 | Os01g0178700 | - | Detail |