| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g28080 | 4:20,751,300-20,752,871 | - | C2H4g06421 | CX4g034856 | LOC_Os04g39980 | Os04g0475600 | DAO | Detail |
| C1H4g09528 | 4:20,768,585-20,770,968 | + | C2H4g03255 | CX4g033390 | LOC_Os04g40030 | Os04g0476000 | - | Detail |
| C1H4g27545 | 4:20,771,754-20,778,207 | - | C2H4g11644 | CX4g033811 | LOC_Os04g40040 | Os04g0476100 | - | Detail |
| C1H4g01159 | 4:20,785,800-20,794,664 | + | C2H4g01499 | CX4g033662 | LOC_Os04g40050 | Os04g0476400 | - | Detail |
| C1H4g20165 | 4:20,795,809-20,800,404 | + | C2H4g21737 | CX4g033662 | LOC_Os04g40060 | Os04g0476500 | - | Detail |
| C1H4g28689 | 4:20,801,891-20,808,395 | + | C2H4g08434 | CX4g034928 | LOC_Os04g40070 | Os04g0476600 | - | Detail |
| C1H4g22382 | 4:20,809,335-20,812,531 | + | C2H4g27838 | CX4g036402 | LOC_Os04g40080 | Os04g0476700 | OsIRL3 | Detail |
| C1H4g14627 | 4:20,812,852-20,817,534 | - | C2H4g01330 | CX4g031992 | LOC_Os04g40090 | Os04g0476800 | OsNBR1 | Detail |
| C1H4g19548 | 4:20,821,850-20,824,134 | + | C2H4g29662 | CX4g034194 | LOC_Os04g40100 | Os04g0477000 | - | Detail |
| C1H4g16625 | 4:20,827,441-20,827,929 | - | C2H4g02766 | CX4g033655 | LOC_Os04g40120 | Os04g0477100 | - | Detail |
| C1H4g22165 | 4:20,829,229-20,835,033 | - | C2H4g28888 | CX4g031850 | LOC_Os04g40130 | Os04g0477200 | - | Detail |
| C1H4g04341 | 4:20,839,032-20,841,960 | - | C2H4g16963 | CX4g035932 | LOC_Os04g40150 | Os04g0477500 | - | Detail |
| C1H4g30761 | 4:20,853,548-20,855,224 | + | C2H4g03853 | CX4g032211 | LOC_Os04g40180 | Os04g0477900 | - | Detail |
| C1H4g19712 | 4:20,855,513-20,859,706 | + | C2H4g11207 | CX4g035771 | LOC_Os04g40290 | Os04g0479000 | CRC1 | Detail |
| C1H4g01004 | 4:20,860,175-20,863,388 | - | C2H4g19162 | CX4g036544 | LOC_Os04g40300 | Os04g0479100 | - | Detail |
| C1H4g10287 | 4:20,864,372-20,867,997 | - | C2H4g07894 | CX4g033124 | LOC_Os04g40310 | Os04g0479200 | - | Detail |
| C1H4g28704 | 4:20,869,540-20,872,337 | - | C2H4g17535 | CX4g033414 | LOC_Os04g40320 | Os04g0479300 | - | Detail |
| C1H4g05029 | 4:20,875,603-20,878,480 | - | C2H4g08628 | CX4g035703 | LOC_Os04g40330 | Os04g0479500 | - | Detail |
| C1H4g29506 | 4:20,884,039-20,887,612 | + | C2H4g04586 | CX4g034298 | LOC_Os04g40370 | Os04g0479800 | - | Detail |
| C1H4g07932 | 4:20,891,586-20,892,203 | - | C2H4g28967 | CX4g035464 | - | Os04g0480050 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003381 | 1:37,207,691-37,208,163 | - | C1H12g09894 | C2H8g28836 | - | - | - | Detail |
| CX1g007121 | 1:37,212,209-37,212,394 | + | - | - | - | Os01g0612350 | - | Detail |
| CX1g002915 | 1:37,224,226-37,226,532 | + | C1H1g26383 | C2H1g17242 | LOC_Os01g72330 | Os01g0952500 | RR4, rr4, OsRR4, Rra3, OsRRA3 | Detail |
| CX1g006787 | 1:37,229,513-37,237,212 | + | C1H1g28344 | C2H1g15970 | LOC_Os01g72340 | Os01g0952600 | - | Detail |
| CX1g000308 | 1:37,241,214-37,246,356 | + | C1H1g14812 | C2H1g26616 | LOC_Os01g72350 | Os01g0952700 | - | Detail |
| CX1g004115 | 1:37,249,184-37,249,846 | + | C1H1g24549 | - | LOC_Os01g72360 | Os01g0952900 | - | Detail |
| CX1g006331 | 1:37,252,392-37,254,489 | - | C1H1g10733 | C2H1g27034 | LOC_Os01g72370 | Os01g0952800 | - | Detail |
| CX1g002462 | 1:37,259,882-37,262,032 | + | C1H1g18549 | C2H1g16159 | LOC_Os01g72380 | Os01g0953100 | - | Detail |
| CX1g001591 | 1:37,263,352-37,264,545 | - | C1H1g01146 | C2H1g14926 | LOC_Os01g72420 | Os01g0953500 | - | Detail |
| CX1g003263 | 1:37,269,785-37,272,080 | - | C1H1g04628 | C2H1g03834 | LOC_Os01g72430 | Os01g0953600 | - | Detail |
| CX1g005142 | 1:37,279,971-37,280,603 | + | C1H1g24244 | - | LOC_Os01g72450 | Os01g0953801 | - | Detail |
| CX1g000799 | 1:37,283,862-37,285,079 | + | C1H1g09009 | C2H1g02375 | LOC_Os01g72460 | Os01g0954000 | - | Detail |
| CX1g000592 | 1:37,286,859-37,287,116 | - | C1H1g07941 | - | LOC_Os01g72470 | Os01g0954100 | - | Detail |
| CX1g002521 | 1:37,290,471-37,292,192 | + | C1H1g12859 | C2H1g05250 | LOC_Os01g72480 | Os01g0954400 | OsPIE1 | Detail |
| CX1g002910 | 1:37,304,142-37,307,192 | - | C1H1g06637 | C2H1g18488 | LOC_Os01g72490 | Os01g0954500 | - | Detail |
| CX1g005117 | 1:37,308,934-37,309,176 | + | - | - | - | - | - | Detail |
| CX1g000159 | 1:37,325,362-37,326,510 | - | C1H1g19549 | C2H1g22549 | LOC_Os01g72510 | Os01g0954900 | - | Detail |
| CX1g001249 | 1:37,327,163-37,328,021 | + | C1H1g18988 | C2H1g00932 | LOC_Os01g58160 | - | - | Detail |
| CX1g005638 | 1:37,331,226-37,334,910 | - | C1H1g29256 | C2H1g13785 | LOC_Os01g72520 | Os01g0955000 | - | Detail |
| CX1g003682 | 1:37,339,468-37,339,770 | - | - | - | - | Os01g0955050 | - | Detail |