| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g19986 | 5:23,348,339-23,348,854 | + | C2H5g11276 | CX5g039972 | LOC_Os05g49620 | Os05g0571200 | OsWRKY19 | Detail |
| C1H5g04002 | 5:23,349,083-23,351,954 | - | C2H5g07321 | CX5g039084 | LOC_Os05g49640 | - | - | Detail |
| C1H5g05630 | 5:23,352,898-23,354,661 | - | C2H5g09536 | CX5g039473 | LOC_Os05g49650 | Os05g0571400 | - | Detail |
| C1H5g23505 | 5:23,355,503-23,359,102 | - | C2H5g14116 | CX5g037409 | LOC_Os05g49680 | Os05g0571700 | - | Detail |
| C1H5g31650 | 5:23,362,863-23,363,681 | - | C2H5g01741 | CX5g038122 | LOC_Os05g49700 | Os05g0572000 | OsRPH1 | Detail |
| C1H5g09233 | 5:23,373,305-23,375,337 | - | C2H5g01004 | CX5g040343 | LOC_Os05g49730 | Os05g0572700 | - | Detail |
| C1H5g26987 | 5:23,383,966-23,386,029 | - | C2H5g20444 | CX5g037759 | LOC_Os05g49740 | Os05g0572900 | - | Detail |
| C1H5g12531 | 5:23,387,390-23,390,584 | - | C2H5g08690 | CX5g039397 | LOC_Os05g49750 | Os05g0573000 | - | Detail |
| C1H5g06006 | 5:23,393,492-23,396,694 | + | C2H5g17652 | CX5g036976 | LOC_Os05g49760 | Os05g0573200 | - | Detail |
| C1H5g18333 | 5:23,396,913-23,403,221 | - | C2H5g07346 | CX5g036857 | LOC_Os05g49770 | Os05g0573300 | - | Detail |
| C1H5g30361 | 5:23,418,717-23,421,879 | + | C2H5g13745 | CX5g039933 | LOC_Os05g49780 | Os05g0573500 | HAP3C, OsHAP3C, OsNF-YB-4, NFYB4 | Detail |
| C1H5g18248 | 5:23,424,184-23,424,597 | - | C2H5g25143 | CX5g040236 | LOC_Os05g49790 | Os05g0573600 | - | Detail |
| C1H5g00854 | 5:23,425,294-23,428,727 | - | C2H5g09568 | CX5g037555 | LOC_Os05g49800 | Os05g0573700 | - | Detail |
| C1H5g11098 | 5:23,431,341-23,434,573 | + | C2H5g07066 | CX5g040047 | LOC_Os05g49810 | Os05g0573800 | - | Detail |
| C1H5g10056 | 5:23,434,882-23,438,835 | - | C2H5g06386 | CX5g037660 | LOC_Os05g49820 | Os05g0573900 | - | Detail |
| C1H5g18130 | 5:23,443,309-23,444,627 | + | C2H5g04324 | CX5g038298 | LOC_Os05g49830 | Os05g0574000 | - | Detail |
| C1H5g18110 | 5:23,444,873-23,448,713 | - | C2H5g11612 | CX5g038739 | LOC_Os05g49840 | Os05g0574100 | - | Detail |
| C1H5g16150 | 5:23,452,828-23,453,286 | + | C2H5g16314 | CX5g037745 | LOC_Os05g49860 | Os05g0574300 | - | Detail |
| C1H5g12972 | 5:23,454,880-23,458,472 | - | C2H5g21858 | CX5g037549 | LOC_Os05g49880 | Os05g0574400 | OsMDH5.1 | Detail |
| C1H5g25768 | 5:23,460,150-23,462,384 | - | C2H5g16147 | CX5g040904 | LOC_Os05g49890 | Os05g0574500 | OsRAN2 | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001407 | 1:37,063,650-37,064,579 | + | - | - | - | - | - | Detail |
| CX1g004103 | 1:37,070,471-37,070,635 | + | - | - | - | Os01g0863100 | - | Detail |
| CX1g002411 | 1:37,084,046-37,088,696 | - | C1H1g23618 | C2H1g13462 | LOC_Os01g72049 | Os01g0949060 | - | Detail |
| CX1g003732 | 1:37,095,962-37,096,558 | + | C1H1g17659 | C2H1g14897 | LOC_Os01g72080 | Os01g0949300 | - | Detail |
| CX1g003977 | 1:37,100,117-37,102,810 | - | C1H1g24211 | C2H1g17329 | LOC_Os01g72090 | Os01g0949400 | - | Detail |
| CX1g004333 | 1:37,104,206-37,104,643 | - | C1H1g05070 | C2H1g14897 | LOC_Os01g72100 | Os01g0949500 | - | Detail |
| CX1g001087 | 1:37,132,617-37,134,067 | + | C1H1g15694 | C2H1g19803 | LOC_Os01g72190 | - | - | Detail |
| CX1g004052 | 1:37,135,899-37,137,305 | - | C1H1g31521 | - | LOC_Os01g72200 | Os01g0950800 | - | Detail |
| CX1g000649 | 1:37,138,254-37,140,399 | - | C1H1g27599 | C2H1g09890 | LOC_Os01g72205 | Os01g0950866 | - | Detail |
| CX1g006637 | 1:37,140,738-37,144,418 | + | C1H1g26489 | C2H1g20439 | LOC_Os01g72210 | Os01g0950900 | - | Detail |
| CX1g001273 | 1:37,145,088-37,151,335 | - | C1H1g26405 | C2H1g27207 | LOC_Os01g72220 | Os01g0951000 | OsFY | Detail |
| CX1g004320 | 1:37,153,570-37,156,841 | + | C1H1g21234 | C2H1g23592 | LOC_Os01g72230 | Os01g0951100 | - | Detail |
| CX1g004161 | 1:37,158,253-37,161,219 | + | C1H1g03325 | C2H1g09816 | LOC_Os01g72240 | Os01g0951200 | - | Detail |
| CX1g005185 | 1:37,162,234-37,165,511 | + | C1H1g03325 | C2H1g13129 | LOC_Os01g72250 | Os01g0951400 | - | Detail |
| CX1g005013 | 1:37,166,124-37,167,761 | - | C1H1g25508 | C2H1g26033 | LOC_Os01g72260 | Os01g0951500 | CYP94E2, OsCYP94E2 | Detail |
| CX1g006323 | 1:37,172,959-37,176,097 | - | C1H1g24604 | C2H1g09971 | LOC_Os01g72280 | Os01g0951800 | - | Detail |
| CX1g003867 | 1:37,184,635-37,185,425 | + | C1H1g13711 | C2H1g11533 | LOC_Os01g72290 | Os01g0952000 | - | Detail |
| CX1g000435 | 1:37,192,093-37,193,234 | + | C1H1g12927 | C2H1g04145 | LOC_Os01g72300 | Os01g0952100 | - | Detail |
| CX1g001457 | 1:37,194,181-37,199,195 | + | C1H1g25821 | C2H1g17493 | LOC_Os01g72310 | Os01g0952200 | - | Detail |
| CX1g004562 | 1:37,200,188-37,206,927 | - | C1H1g12568 | C2H1g24796 | LOC_Os01g72320 | Os01g0952300 | - | Detail |