| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H9g02560 | 9:11,384,327-11,384,862 | + | C1H9g07383 | CX9g056499 | LOC_Os09g21770 | Os09g0386500 | OsEBL2 | Detail |
| C2H9g07150 | 9:11,388,395-11,394,655 | - | C1H9g16738 | CX9g057590 | LOC_Os09g21780 | Os09g0386600 | - | Detail |
| C2H9g12396 | 9:11,409,338-11,413,360 | + | C1H9g23102 | CX9g056020 | LOC_Os09g22440 | Os09g0392000 | - | Detail |
| C2H9g04209 | 9:11,415,591-11,419,272 | + | C1H9g00211 | CX9g054898 | LOC_Os09g22450 | Os09g0392100 | OsEDS1 | Detail |
| C2H9g17686 | 9:11,427,394-11,435,712 | + | C1H9g02506 | - | LOC_Os09g22490 | Os12g0275400 | - | Detail |
| C2H9g01293 | 9:11,446,420-11,451,437 | + | C1H9g11219 | CX9g057799 | LOC_Os09g22540 | Os09g0393200 | OsJMJ718 | Detail |
| C2H9g12185 | 9:11,475,949-11,483,458 | - | C1H9g30997 | CX9g057399 | LOC_Os09g23070 | Os09g0394100 | - | Detail |
| C2H9g07203 | 9:11,476,461-11,476,850 | + | C1H9g16300 | CX9g057399 | - | Os09g0393801 | - | Detail |
| C2H9g23876 | 9:11,484,680-11,485,378 | - | C1H9g09905 | CX9g057598 | LOC_Os09g23084 | Os09g0394300 | - | Detail |
| C2H9g15186 | 9:11,489,350-11,493,198 | - | C1H9g09905 | CX9g057598 | LOC_Os09g23084 | Os09g0394300 | - | Detail |
| C2H9g25736 | 9:11,520,287-11,524,781 | + | C1H9g21012 | CX9g057002 | LOC_Os09g23110 | Os09g0394500 | OspGlcT3 | Detail |
| C2H9g21887 | 9:11,531,055-11,542,042 | - | C1H9g04354 | CX9g056382 | LOC_Os09g23140 | Os09g0394600 | - | Detail |
| C2H9g21753 | 9:11,542,772-11,543,296 | - | C1H9g06730 | - | - | - | - | Detail |
| C2H9g12341 | 9:11,548,144-11,553,160 | + | C1H9g07311 | CX9g056041 | LOC_Os09g23160 | Os09g0394900 | - | Detail |
| C2H9g20514 | 9:11,587,171-11,593,057 | - | - | CX9g055482 | LOC_Os09g23480 | - | - | Detail |
| C2H9g06605 | 9:11,607,761-11,613,512 | + | C1H9g00378 | CX9g057525 | LOC_Os09g23200 | Os09g0395300 | RL9, rl9, OsADD1 | Detail |
| C2H9g24566 | 9:11,621,383-11,621,697 | - | - | - | - | Os09g0395400 | - | Detail |
| C2H9g01641 | 9:11,629,631-11,631,037 | - | C1H9g06586 | CX9g056960 | LOC_Os09g23220 | Os09g0395600 | - | Detail |
| C2H9g28359 | 9:11,642,562-11,645,338 | + | C1H9g04135 | CX9g056289 | LOC_Os09g23280 | Os09g0396300 | - | Detail |
| C2H9g19158 | 9:11,671,993-11,673,781 | + | C1H9g25860 | CX9g055871 | LOC_Os09g23300 | Os09g0396900 | OsVIT2 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g003925 | 1:36,885,346-36,888,687 | - | C1H1g09696 | C2H1g23990 | LOC_Os01g71770 | Os01g0945800 | - | Detail |
| CX1g005735 | 1:36,892,322-36,893,617 | + | C1H1g13289 | - | LOC_Os01g71780 | Os01g0946100 | - | Detail |
| CX1g004537 | 1:36,896,304-36,896,915 | + | C1H1g14230 | C2H1g17128 | LOC_Os01g71790 | Os01g0946200 | - | Detail |
| CX1g003320 | 1:36,899,183-36,900,109 | - | C1H1g16335 | C2H1g24810 | LOC_Os01g71860 | Os01g0947000 | - | Detail |
| CX1g005530 | 1:36,901,777-36,907,226 | + | C1H1g01086 | C2H1g24810 | LOC_Os01g71830 | Os01g0946700 | OsGLN1 | Detail |
| CX1g006063 | 1:36,908,492-36,909,872 | - | C1H1g19149 | C2H1g02291 | LOC_Os01g71800 | Os01g0946300 | - | Detail |
| CX1g000210 | 1:36,911,499-36,913,061 | - | C1H1g28208 | C2H1g26163 | - | Os01g0946850 | - | Detail |
| CX1g000254 | 1:36,930,844-36,932,970 | + | C1H1g01086 | C2H1g25094 | LOC_Os01g71830 | Os01g0946500 | - | Detail |
| CX1g006738 | 1:36,943,059-36,943,985 | + | C1H1g16335 | C2H1g25094 | LOC_Os01g71860 | Os01g0947000 | - | Detail |
| CX1g006181 | 1:36,947,870-36,949,162 | + | C1H1g14011 | C2H1g29780 | LOC_Os01g60590 | Os01g0373400 | - | Detail |
| CX1g002683 | 1:36,950,049-36,950,868 | + | C1H1g30039 | C2H1g17996 | LOC_Os01g65240 | Os01g0872900 | - | Detail |
| CX1g006940 | 1:36,953,685-36,956,627 | - | C1H1g16091 | C2H1g07223 | LOC_Os01g71930 | Os01g0947700 | Osg1 | Detail |
| CX1g005350 | 1:36,992,967-37,000,137 | + | C1H1g28153 | C2H1g25982 | LOC_Os01g71960 | Os01g0948100 | OsMus81, OsMus81beta, OsMus81β | Detail |
| CX1g002069 | 1:37,013,794-37,015,131 | + | C1H1g11535 | C2H1g13478 | LOC_Os01g71970 | Os01g0948200 | OsDLA | Detail |
| CX1g003090 | 1:37,017,071-37,019,246 | + | C1H1g04988 | C2H1g24573 | LOC_Os01g71980 | Os01g0948300 | - | Detail |
| CX1g004443 | 1:37,019,784-37,022,584 | - | C1H1g12107 | C2H1g07613 | LOC_Os01g71990 | Os01g0948400 | OsP5CR | Detail |
| CX1g001292 | 1:37,024,110-37,027,364 | - | C1H1g04245 | C2H1g30437 | LOC_Os01g72000 | Os01g0948500 | - | Detail |
| CX1g006880 | 1:37,033,695-37,035,175 | - | - | - | - | - | - | Detail |
| CX1g002112 | 1:37,038,551-37,038,715 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g006785 | 1:37,042,934-37,045,791 | - | C1H1g24544 | C2H1g07385 | LOC_Os01g72020 | Os01g0948900 | OsBOP1, NH4 | Detail |