| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g15039 | 5:12,828,957-12,830,828 | + | C2H5g28661 | CX5g040774 | LOC_Os05g27730 | Os05g0343400 | WRKY53, OsWRKY53 | Detail |
| C1H5g04216 | 5:12,834,512-12,835,555 | - | C2H5g16881 | CX5g038974 | LOC_Os05g27740 | - | - | Detail |
| C1H5g25967 | 5:12,844,306-12,845,569 | + | C2H5g15026 | - | - | - | - | Detail |
| C1H5g00690 | 5:12,865,309-12,870,596 | + | C2H5g02617 | CX5g039180 | LOC_Os05g28090 | Os05g0348100 | OsNdhl | Detail |
| C1H5g23669 | 5:12,871,966-12,872,455 | - | C2H5g26312 | CX5g039491 | - | Os05g0588300 | - | Detail |
| C1H5g19699 | 5:12,903,347-12,904,201 | + | C2H5g18593 | CX5g039840 | LOC_Os05g28040 | Os05g0347400 | OsG1L9 | Detail |
| C1H5g17201 | 5:12,920,650-12,923,329 | + | C2H5g24655 | CX5g038657 | LOC_Os05g28010 | Os05g0347000 | - | Detail |
| C1H5g26235 | 5:12,938,982-12,939,672 | + | C2H5g25283 | CX5g041112 | LOC_Os05g27980 | Os05g0346800 | - | Detail |
| C1H5g30238 | 5:12,943,741-12,950,452 | + | C2H5g25338 | CX5g037334 | LOC_Os05g27960 | Os05g0346500 | Endo-Os | Detail |
| C1H5g26042 | 5:12,953,336-12,957,651 | - | C2H5g21564 | CX5g037807 | LOC_Os05g27950 | Os05g0346400 | - | Detail |
| C1H5g02425 | 5:12,958,100-12,961,072 | + | C2H5g17547 | CX5g037658 | LOC_Os05g27940 | Os05g0346300 | - | Detail |
| C1H5g00367 | 5:12,963,731-12,967,018 | + | C2H5g29783 | CX5g041046 | LOC_Os05g27930 | Os05g0346200 | OsDREB2B | Detail |
| C1H5g21070 | 5:12,968,768-12,975,729 | - | C2H5g22054 | CX5g039687 | LOC_Os05g27920 | Os05g0346100 | - | Detail |
| C1H5g30213 | 5:12,989,404-12,989,985 | + | C2H5g22004 | CX5g039960 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| C1H5g28263 | 5:12,991,248-12,992,229 | + | C2H5g21940 | CX5g039960 | LOC_Os05g27890 | Os05g0345700 | - | Detail |
| C1H5g11256 | 5:12,995,064-13,002,071 | + | C2H5g05395 | CX5g038275 | LOC_Os05g27880 | Os05g0345500 | - | Detail |
| C1H5g03976 | 5:13,004,740-13,016,822 | + | C2H5g03667 | CX5g039058 | LOC_Os05g27870 | Os05g0345400 | - | Detail |
| C1H5g26971 | 5:13,050,293-13,054,393 | - | C2H5g28639 | CX5g038888 | LOC_Os05g27820 | Os05g0345100 | OsSec14-14 | Detail |
| C1H5g06134 | 5:13,081,043-13,081,333 | + | C2H5g26086 | CX5g040808 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| C1H5g05160 | 5:13,081,412-13,083,530 | + | C2H5g01225 | CX5g040808 | LOC_Os05g27790 | Os05g0344400 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000822 | 1:34,948,280-34,955,063 | + | C1H1g18538 | C2H1g19705 | LOC_Os01g67970 | Os01g0907400 | JMJ705 | Detail |
| CX1g000036 | 1:34,956,531-34,957,646 | + | C1H1g19874 | C2H1g29254 | LOC_Os01g67980 | Os01g0907600 | OsSAG12-1 | Detail |
| CX1g003353 | 1:34,970,250-34,970,465 | + | - | - | - | Os01g0728000 | - | Detail |
| CX1g000912 | 1:34,973,015-34,976,581 | + | C1H1g08768 | C2H1g19503 | LOC_Os01g68000 | Os01g0907900 | PLA2, pla2, pla2(pla2-1, pla2-2), plt2, LHD2 | Detail |
| CX1g000788 | 1:34,987,318-34,990,053 | - | C1H1g13810 | C2H1g14371 | LOC_Os01g68010 | Os01g0908100 | - | Detail |
| CX1g002877 | 1:34,993,563-34,997,264 | + | C1H1g00934 | C2H1g27794 | LOC_Os01g68020 | Os01g0908200 | OsBT | Detail |
| CX1g005492 | 1:34,998,650-34,999,922 | - | C1H1g26380 | C2H1g06918 | LOC_Os01g68030 | Os01g0908400 | - | Detail |
| CX1g002681 | 1:35,001,221-35,004,454 | - | C1H1g26157 | C2H1g30537 | LOC_Os01g68040 | Os01g0908500 | - | Detail |
| CX1g003019 | 1:35,011,548-35,013,895 | + | C1H1g02663 | C2H1g27819 | LOC_Os01g68050 | Os01g0908600 | OsProT1 | Detail |
| CX1g003471 | 1:35,014,768-35,018,309 | - | C1H1g28238 | C2H1g20684 | LOC_Os01g68060 | Os01g0908700 | - | Detail |
| CX1g001370 | 1:35,026,139-35,027,659 | + | C1H1g12819 | C2H1g22636 | LOC_Os01g68070 | Os01g0908800 | - | Detail |
| CX1g007120 | 1:35,031,210-35,032,580 | - | C1H1g18966 | - | LOC_Os01g68090 | Os01g0909000 | - | Detail |
| CX1g001897 | 1:35,033,860-35,036,731 | + | C1H1g09218 | C2H1g29519 | LOC_Os01g68104 | Os01g0909100 | - | Detail |
| CX1g000171 | 1:35,039,632-35,039,793 | - | - | C2H1g05938 | - | Os01g0909150 | - | Detail |
| CX1g001307 | 1:35,041,815-35,051,455 | - | C1H1g21604 | C2H1g23470 | LOC_Os01g68120 | Os01g0909200 | OsDCL3a | Detail |
| CX1g003340 | 1:35,052,600-35,052,986 | - | - | - | - | - | - | Detail |
| CX1g000844 | 1:35,055,581-35,059,205 | + | C1H1g09277 | C2H1g03983 | LOC_Os01g68130 | Os01g0909300 | - | Detail |
| CX1g002611 | 1:35,060,767-35,061,732 | - | C1H1g09913 | - | LOC_Os01g68140 | Os01g0909400 | - | Detail |
| CX1g003036 | 1:35,068,085-35,071,545 | + | C1H1g04879 | C2H1g20920 | LOC_Os01g68260 | Os01g0971200 | - | Detail |
| CX1g005194 | 1:35,072,157-35,073,446 | - | C1H1g17800 | C2H1g26270 | - | Os01g0910500 | - | Detail |