| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H9g28114 | 9:127,927-128,471 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g14009 | 9:138,087-138,631 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g27378 | 9:148,248-148,792 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g01621 | 9:158,408-158,952 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g09939 | 9:168,569-169,113 | - | C2H9g05109 | - | - | - | - | Detail |
| C1H9g10841 | 9:222,155-222,469 | + | - | - | - | - | - | Detail |
| C1H9g20378 | 9:225,139-229,991 | - | C2H9g07486 | CX9g055204 | LOC_Os09g01140 | Os09g0100800 | OsGeBP11 | Detail |
| C1H9g29200 | 9:259,419-263,710 | - | C2H9g02141 | CX9g056163 | LOC_Os09g01290 | Os09g0101100 | - | Detail |
| C1H9g04128 | 9:301,326-311,063 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17462 | 9:311,725-312,382 | - | C2H9g15899 | CX9g055897 | LOC_Os09g01360 | Os09g0101800 | - | Detail |
| C1H9g17478 | 9:331,713-332,598 | - | - | - | - | - | - | Detail |
| C1H9g27523 | 9:368,464-377,135 | + | C2H9g24411 | CX9g057870 | LOC_Os09g01590 | Os09g0103100 | - | Detail |
| C1H9g01741 | 9:380,162-385,109 | + | C2H9g22972 | CX9g057297 | LOC_Os09g01600 | Os09g0103200 | - | Detail |
| C1H9g12264 | 9:397,300-402,931 | + | C2H9g07969 | CX9g055170 | LOC_Os09g01620 | Os09g0103500 | - | Detail |
| C1H9g24389 | 9:405,379-412,173 | - | C2H9g23774 | CX9g055607 | LOC_Os09g01630 | Os09g0103600 | - | Detail |
| C1H9g06955 | 9:441,136-447,435 | + | C2H9g22729 | CX9g055907 | LOC_Os09g01650 | Os09g0103800 | - | Detail |
| C1H9g22354 | 9:471,216-474,715 | - | C2H9g16634 | CX9g057376 | LOC_Os09g01680 | Os09g0104200 | RAD51D, OsRAD51D.3, OsRAD51D, OsRad51D | Detail |
| C1H9g21586 | 9:474,785-477,542 | + | C2H9g14701 | - | LOC_Os09g01690 | Os09g0104300 | - | Detail |
| C1H9g13033 | 9:512,612-515,182 | - | C2H9g17453 | CX9g054917 | LOC_Os09g01790 | - | - | Detail |
| C1H9g05252 | 9:558,682-560,315 | + | C2H9g11873 | CX9g056345 | LOC_Os07g15420 | Os09g0499600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000226 | 1:34,083,561-34,086,020 | + | C1H1g29332 | C2H1g01164 | LOC_Os01g66250 | Os01g0885700 | SDRLK-17 | Detail |
| CX1g003973 | 1:34,091,911-34,092,618 | + | C1H1g27742 | C2H1g00754 | LOC_Os01g66270 | Os01g0885900 | - | Detail |
| CX1g003328 | 1:34,094,231-34,096,803 | - | C1H1g03785 | C2H1g29714 | LOC_Os01g66280 | Os01g0886000 | - | Detail |
| CX1g005146 | 1:34,101,935-34,102,108 | + | - | - | - | - | - | Detail |
| CX1g007029 | 1:34,105,431-34,108,279 | + | C1H1g16950 | C2H1g10247 | LOC_Os01g66290 | Os01g0886200 | - | Detail |
| CX1g005400 | 1:34,112,975-34,113,316 | + | - | - | - | - | - | Detail |
| CX1g005699 | 1:34,113,469-34,117,075 | + | C1H1g22195 | C2H1g02946 | LOC_Os01g66300 | Os01g0886300 | - | Detail |
| CX1g003847 | 1:34,119,790-34,121,861 | - | C1H1g24324 | C2H1g26611 | LOC_Os01g66320 | Os01g0886500 | - | Detail |
| CX1g001643 | 1:34,122,993-34,128,358 | - | C1H1g06569 | C2H1g25926 | LOC_Os01g66330 | Os01g0886600 | - | Detail |
| CX1g002780 | 1:34,136,403-34,140,949 | + | C1H1g09303 | C2H1g16527 | LOC_Os01g66350 | Os01g0886900 | - | Detail |
| CX1g001757 | 1:34,142,847-34,145,750 | + | C1H1g04514 | C2H1g22994 | LOC_Os01g66360 | Os01g0887100 | - | Detail |
| CX1g005333 | 1:34,146,321-34,151,069 | - | C1H1g16536 | C2H1g01577 | LOC_Os01g66379 | Os01g0887400 | - | Detail |
| CX1g003758 | 1:34,158,408-34,158,557 | - | - | - | - | Os01g0887550 | - | Detail |
| CX1g004709 | 1:34,160,194-34,165,051 | - | C1H1g11314 | C2H1g28074 | LOC_Os01g66420 | Os01g0887700 | - | Detail |
| CX1g007087 | 1:34,168,208-34,170,915 | + | C1H1g19688 | C2H1g23351 | LOC_Os01g66440 | - | - | Detail |
| CX1g000045 | 1:34,171,916-34,172,179 | - | C1H1g03558 | - | - | Os01g0888022 | - | Detail |
| CX1g001905 | 1:34,188,568-34,190,492 | + | C1H1g13104 | C2H1g28944 | LOC_Os01g66490 | Os01g0888300 | - | Detail |
| CX1g002416 | 1:34,196,510-34,200,848 | - | C1H1g03540 | C2H1g16784 | LOC_Os01g66500 | Os01g0888500 | - | Detail |
| CX1g004975 | 1:34,205,095-34,208,666 | + | C1H1g07656 | C2H1g08009 | LOC_Os01g66510 | Os01g0888600 | - | Detail |
| CX1g003196 | 1:34,209,258-34,212,540 | - | C1H1g05592 | C2H1g13613 | LOC_Os01g66520 | Os01g0888700 | - | Detail |