| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g30581 | 5:1,145,636-1,146,753 | + | C2H5g07168 | CX5g041100 | LOC_Os05g03174 | Os05g0123100 | OsGT43A | Detail |
| C1H5g28081 | 5:1,149,187-1,151,037 | + | C2H5g02369 | CX5g041100 | LOC_Os05g03174 | Os05g0123100 | OsGT43A | Detail |
| C1H5g23427 | 5:1,157,532-1,161,404 | + | C2H5g22807 | CX5g039819 | LOC_Os05g03190 | Os05g0123200 | - | Detail |
| C1H5g08812 | 5:1,161,442-1,164,657 | - | C2H5g07657 | CX5g040457 | LOC_Os05g03200 | Os05g0123300 | - | Detail |
| C1H5g19342 | 5:1,166,632-1,168,138 | - | C2H5g22124 | CX5g036952 | - | Os05g0123400 | - | Detail |
| C1H5g23275 | 5:1,201,430-1,213,376 | - | C2H5g13999 | CX5g038760 | LOC_Os05g03320 | Os05g0124000 | - | Detail |
| C1H5g11486 | 5:1,217,746-1,230,572 | - | C2H5g05422 | CX5g038760 | LOC_Os05g03390 | Os05g0124600 | - | Detail |
| C1H5g22928 | 5:1,235,049-1,238,958 | - | C2H5g29581 | CX5g038403 | LOC_Os05g03410 | Os05g0124800 | - | Detail |
| C1H5g31600 | 5:1,244,997-1,256,747 | + | C2H5g09329 | CX5g041143 | LOC_Os05g03430 | Os05g0125000 | SIZ1, OsSIZ1 | Detail |
| C1H5g24277 | 5:1,281,211-1,283,629 | + | C2H5g18270 | CX5g039053 | LOC_Os05g03460 | Os05g0125300 | - | Detail |
| C1H5g26628 | 5:1,286,440-1,288,603 | + | C2H5g03114 | CX5g037481 | LOC_Os05g03460 | Os05g0125400 | - | Detail |
| C1H5g28044 | 5:1,289,387-1,294,410 | - | C2H5g07081 | CX5g038585 | LOC_Os05g03480 | Os05g0125500 | - | Detail |
| C1H5g08227 | 5:1,315,180-1,317,763 | + | C2H5g25895 | CX5g040791 | LOC_Os05g03530 | Os05g0126100 | OsTET8 | Detail |
| C1H5g16923 | 5:1,319,360-1,321,091 | - | C2H5g27890 | CX5g038217 | LOC_Os05g03540 | Os05g0126200 | - | Detail |
| C1H5g09990 | 5:1,322,709-1,330,614 | - | C2H5g16906 | CX5g037854 | LOC_Os05g03550 | Os05g0126300 | - | Detail |
| C1H5g28656 | 5:1,344,104-1,348,620 | + | C2H5g20873 | - | LOC_Os05g03574 | Os05g0126700 | - | Detail |
| C1H5g11514 | 5:1,350,460-1,351,157 | - | C2H5g04841 | CX5g039859 | LOC_Os05g03590 | Os05g0126800 | - | Detail |
| C1H5g16424 | 5:1,357,956-1,364,704 | + | C2H5g26559 | CX5g040853 | LOC_Os05g03610 | Os05g0127200 | - | Detail |
| C1H5g24918 | 5:1,371,873-1,374,266 | + | C2H5g15340 | CX5g039240 | LOC_Os05g03620 | Os05g0127300 | - | Detail |
| C1H5g22704 | 5:1,378,076-1,381,838 | + | C2H5g02917 | CX5g040335 | LOC_Os05g03630 | Os05g0562300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001863 | 1:33,935,523-33,937,288 | - | C1H1g12565 | C2H1g26075 | LOC_Os01g66010 | Os01g0882800 | OsAAP8 | Detail |
| CX1g000828 | 1:33,939,764-33,939,925 | + | - | - | - | - | - | Detail |
| CX1g003084 | 1:33,942,281-33,944,215 | + | C1H1g06649 | C2H1g14239 | LOC_Os01g66020 | Os01g0883000 | - | Detail |
| CX1g000214 | 1:33,944,881-33,946,963 | - | C1H1g27902 | C2H1g11503 | LOC_Os01g66030 | Os01g0883100 | OsMADS2 | Detail |
| CX1g004776 | 1:33,949,311-33,955,753 | + | C1H1g29165 | C2H1g08965 | LOC_Os01g66050 | Os01g0883200 | - | Detail |
| CX1g000593 | 1:33,959,845-33,968,027 | + | C1H1g17858 | C2H1g04719 | LOC_Os01g66070 | Os01g0883400 | - | Detail |
| CX1g004921 | 1:33,989,208-33,992,010 | + | C1H1g04579 | C2H1g18953 | LOC_Os01g66100 | Os01g0883800 | 20ox2, C20OX2, GA20, GA20ox-2, Os20ox2, OsGA20ox-2, OsGA20ox2, SD1, SD1-in, SD1-ja, Sd-1, d47, d49, sd-1, sd1, "sd1 (d47, sd1-d, sd1-1)", sd1-1, sd1-2, sd1-3, sd1-4 | Detail |
| CX1g004480 | 1:33,993,658-33,998,018 | - | C1H1g11499 | C2H1g12762 | LOC_Os01g66110 | Os01g0883900 | - | Detail |
| CX1g006945 | 1:34,007,437-34,009,092 | - | C1H1g00819 | C2H1g26289 | LOC_Os01g66120 | Os01g0884300 | OsNAC6 | Detail |
| CX1g000207 | 1:34,017,196-34,021,584 | + | C1H1g22008 | C2H1g15992 | LOC_Os01g66130 | Os01g0884400 | OsPUB16, OsPIE3 | Detail |
| CX1g001201 | 1:34,022,209-34,033,298 | - | C1H1g14405 | C2H1g16552 | LOC_Os01g66140 | Os01g0884500 | - | Detail |
| CX1g001119 | 1:34,035,411-34,037,759 | - | C1H1g17014 | C2H1g27234 | - | - | - | Detail |
| CX1g001844 | 1:34,042,450-34,044,296 | - | C1H1g08290 | C2H1g20664 | LOC_Os01g66150 | Os01g0884700 | - | Detail |
| CX1g005283 | 1:34,046,357-34,047,913 | + | C1H1g07105 | C2H1g19237 | LOC_Os01g66160 | Os01g0884800 | - | Detail |
| CX1g006373 | 1:34,048,153-34,051,176 | - | C1H1g15937 | C2H1g27259 | LOC_Os01g66170 | Os01g0884900 | - | Detail |
| CX1g005687 | 1:34,052,308-34,054,346 | + | C1H1g27873 | C2H1g17695 | LOC_Os01g66180 | Os01g0885000 | - | Detail |
| CX1g002386 | 1:34,056,894-34,058,087 | - | C1H1g01709 | - | LOC_Os01g66190 | Os01g0885200 | - | Detail |
| CX1g002733 | 1:34,062,193-34,065,439 | - | C1H1g19782 | C2H1g03917 | LOC_Os01g66200 | Os01g0885300 | - | Detail |
| CX1g006568 | 1:34,075,160-34,077,988 | - | C1H1g04510 | C2H1g15479 | LOC_Os01g66230 | Os01g0885500 | - | Detail |
| CX1g005515 | 1:34,078,588-34,082,522 | + | C1H1g01972 | C2H1g18513 | LOC_Os01g66240 | Os01g0885600 | - | Detail |