| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H4g24972 | 4:21,516,278-21,517,288 | - | C2H4g23397 | CX4g035048 | LOC_Os04g41560 | Os04g0493000 | OsBBX11 | Detail |
| C1H4g20351 | 4:21,522,311-21,523,231 | - | C2H4g12805 | CX4g036488 | LOC_Os04g41570 | Os04g0493100 | - | Detail |
| C1H4g27725 | 4:21,534,701-21,536,964 | - | C2H4g13607 | CX4g036094 | LOC_Os04g41580 | Os04g0493300 | - | Detail |
| C1H4g28922 | 4:21,543,581-21,544,723 | - | C2H4g26460 | CX4g034458 | LOC_Os04g41620 | Os04g0493400 | OsChia2b, Cht4 | Detail |
| C1H4g13597 | 4:21,547,470-21,547,745 | - | C2H4g19317 | CX4g032644 | LOC_Os04g41640 | Os04g0493600 | - | Detail |
| C1H4g17237 | 4:21,552,116-21,553,046 | - | C2H4g26460 | CX4g032644 | LOC_Os04g41680 | Os04g0494100 | OsChia4a, Cht5 | Detail |
| C1H4g09263 | 4:21,560,793-21,563,228 | + | C2H4g22711 | - | LOC_Os04g41710 | Os04g0494600 | - | Detail |
| C1H4g07021 | 4:21,567,735-21,569,159 | + | C2H4g14372 | - | LOC_Os04g41740 | Os04g0494800 | - | Detail |
| C1H4g11237 | 4:21,571,453-21,572,857 | + | C2H4g03458 | - | LOC_Os04g41750 | Os04g0494900 | - | Detail |
| C1H4g16985 | 4:21,573,661-21,575,009 | + | C2H4g08263 | - | LOC_Os04g41759 | Os04g0494950 | - | Detail |
| C1H4g18754 | 4:21,578,460-21,581,050 | + | C2H4g02443 | - | LOC_Os04g41770 | Os04g0495000 | - | Detail |
| C1H4g14867 | 4:21,593,417-21,596,560 | + | C2H4g12186 | CX4g036530 | LOC_Os04g41810 | Os04g0495400 | - | Detail |
| C1H4g27163 | 4:21,596,949-21,600,423 | - | C2H4g17209 | CX4g035960 | LOC_Os04g41820 | Os04g0495500 | - | Detail |
| C1H4g14175 | 4:21,601,769-21,605,201 | - | C2H4g13911 | CX4g033060 | LOC_Os04g41830 | Os04g0495700 | - | Detail |
| C1H4g26854 | 4:21,614,034-21,619,393 | + | C2H4g02675 | CX4g033303 | LOC_Os04g41850 | Os04g0495800 | - | Detail |
| C1H4g03416 | 4:21,623,588-21,624,498 | + | C2H4g17566 | CX4g033173 | LOC_Os04g41860 | Os04g0495900 | - | Detail |
| C1H4g01836 | 4:21,627,659-21,628,318 | - | C2H4g04982 | CX4g031576 | LOC_Os04g44950 | Os04g0496000 | - | Detail |
| C1H4g14339 | 4:21,630,396-21,633,424 | - | C2H4g13958 | CX4g031576 | LOC_Os04g41875 | Os04g0496150 | - | Detail |
| C1H4g24271 | 4:21,647,402-21,652,523 | + | C2H4g25716 | CX4g032490 | LOC_Os04g41910 | Os04g0496400 | - | Detail |
| C1H4g27559 | 4:21,654,383-21,656,330 | - | C2H4g12720 | CX4g034594 | LOC_Os04g41920 | Os04g0496600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g001863 | 1:33,935,523-33,937,288 | - | C1H1g12565 | C2H1g26075 | LOC_Os01g66010 | Os01g0882800 | OsAAP8 | Detail |
| CX1g000828 | 1:33,939,764-33,939,925 | + | - | - | - | - | - | Detail |
| CX1g003084 | 1:33,942,281-33,944,215 | + | C1H1g06649 | C2H1g14239 | LOC_Os01g66020 | Os01g0883000 | - | Detail |
| CX1g000214 | 1:33,944,881-33,946,963 | - | C1H1g27902 | C2H1g11503 | LOC_Os01g66030 | Os01g0883100 | OsMADS2 | Detail |
| CX1g004776 | 1:33,949,311-33,955,753 | + | C1H1g29165 | C2H1g08965 | LOC_Os01g66050 | Os01g0883200 | - | Detail |
| CX1g000593 | 1:33,959,845-33,968,027 | + | C1H1g17858 | C2H1g04719 | LOC_Os01g66070 | Os01g0883400 | - | Detail |
| CX1g004921 | 1:33,989,208-33,992,010 | + | C1H1g04579 | C2H1g18953 | LOC_Os01g66100 | Os01g0883800 | 20ox2, C20OX2, GA20, GA20ox-2, Os20ox2, OsGA20ox-2, OsGA20ox2, SD1, SD1-in, SD1-ja, Sd-1, d47, d49, sd-1, sd1, "sd1 (d47, sd1-d, sd1-1)", sd1-1, sd1-2, sd1-3, sd1-4 | Detail |
| CX1g004480 | 1:33,993,658-33,998,018 | - | C1H1g11499 | C2H1g12762 | LOC_Os01g66110 | Os01g0883900 | - | Detail |
| CX1g006945 | 1:34,007,437-34,009,092 | - | C1H1g00819 | C2H1g26289 | LOC_Os01g66120 | Os01g0884300 | OsNAC6 | Detail |
| CX1g000207 | 1:34,017,196-34,021,584 | + | C1H1g22008 | C2H1g15992 | LOC_Os01g66130 | Os01g0884400 | OsPUB16, OsPIE3 | Detail |
| CX1g001201 | 1:34,022,209-34,033,298 | - | C1H1g14405 | C2H1g16552 | LOC_Os01g66140 | Os01g0884500 | - | Detail |
| CX1g001119 | 1:34,035,411-34,037,759 | - | C1H1g17014 | C2H1g27234 | - | - | - | Detail |
| CX1g001844 | 1:34,042,450-34,044,296 | - | C1H1g08290 | C2H1g20664 | LOC_Os01g66150 | Os01g0884700 | - | Detail |
| CX1g005283 | 1:34,046,357-34,047,913 | + | C1H1g07105 | C2H1g19237 | LOC_Os01g66160 | Os01g0884800 | - | Detail |
| CX1g006373 | 1:34,048,153-34,051,176 | - | C1H1g15937 | C2H1g27259 | LOC_Os01g66170 | Os01g0884900 | - | Detail |
| CX1g005687 | 1:34,052,308-34,054,346 | + | C1H1g27873 | C2H1g17695 | LOC_Os01g66180 | Os01g0885000 | - | Detail |
| CX1g002386 | 1:34,056,894-34,058,087 | - | C1H1g01709 | - | LOC_Os01g66190 | Os01g0885200 | - | Detail |
| CX1g002733 | 1:34,062,193-34,065,439 | - | C1H1g19782 | C2H1g03917 | LOC_Os01g66200 | Os01g0885300 | - | Detail |
| CX1g006568 | 1:34,075,160-34,077,988 | - | C1H1g04510 | C2H1g15479 | LOC_Os01g66230 | Os01g0885500 | - | Detail |
| CX1g005515 | 1:34,078,588-34,082,522 | + | C1H1g01972 | C2H1g18513 | LOC_Os01g66240 | Os01g0885600 | - | Detail |