| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H5g17232 | 5:21,641,163-21,648,321 | + | C2H5g13260 | CX5g039556 | LOC_Os05g45720 | Os05g0533600 | SSIVB, OsSSIVb, SSIV-2, OsSSIV-2, SSIVb, SSIV-2 | Detail |
| C1H5g27858 | 5:21,648,946-21,651,000 | + | C2H5g03217 | CX5g039089 | LOC_Os05g45730 | Os05g0533700 | - | Detail |
| C1H5g22620 | 5:21,652,074-21,653,596 | + | C2H5g09746 | CX5g038471 | LOC_Os05g45740 | Os05g0533800 | - | Detail |
| C1H5g12717 | 5:21,654,766-21,658,510 | + | C2H5g27500 | CX5g038527 | LOC_Os05g45750 | Os05g0533900 | - | Detail |
| C1H5g28841 | 5:21,658,953-21,660,872 | - | C2H5g28882 | CX5g040105 | LOC_Os05g45760 | Os05g0534000 | - | Detail |
| C1H5g15352 | 5:21,661,859-21,664,094 | + | C2H5g06715 | CX5g036728 | LOC_Os05g45770 | Os05g0534100 | - | Detail |
| C1H5g11246 | 5:21,673,277-21,674,219 | + | - | CX5g040134 | - | - | - | Detail |
| C1H5g21827 | 5:21,675,920-21,677,372 | + | C2H5g12404 | CX5g040749 | LOC_Os05g45810 | Os05g0534400 | OsCBL4 | Detail |
| C1H5g13213 | 5:21,677,885-21,681,504 | - | C2H5g20385 | CX5g037499 | LOC_Os05g45820 | Os05g0534500 | - | Detail |
| C1H5g03368 | 5:21,685,266-21,690,601 | - | C2H5g26781 | CX5g039192 | LOC_Os05g45830 | Os05g0534600 | - | Detail |
| C1H5g18942 | 5:21,693,054-21,698,378 | + | C2H5g01370 | CX5g040022 | LOC_Os05g45840 | Os05g0534800 | - | Detail |
| C1H5g12782 | 5:21,699,530-21,702,184 | + | C2H5g21069 | CX5g037833 | LOC_Os05g45850 | Os05g0534900 | - | Detail |
| C1H5g14563 | 5:21,705,589-21,708,813 | - | C2H5g29794 | CX5g037747 | LOC_Os05g45860 | Os05g0535100 | - | Detail |
| C1H5g01171 | 5:21,710,326-21,710,785 | + | C2H5g19676 | - | - | - | - | Detail |
| C1H5g05296 | 5:21,711,820-21,712,482 | - | C2H5g22490 | CX5g037885 | - | Os07g0631500 | - | Detail |
| C1H5g29728 | 5:21,725,141-21,728,294 | + | C2H5g10427 | CX5g038811 | LOC_Os05g45870 | Os05g0535200 | - | Detail |
| C1H5g30804 | 5:21,730,449-21,731,275 | + | C2H5g08565 | CX5g039224 | LOC_Os05g45870 | Os05g0535300 | - | Detail |
| C1H5g31590 | 5:21,733,376-21,736,850 | + | C2H5g19368 | CX5g037476 | LOC_Os05g45880 | Os05g0535400 | - | Detail |
| C1H5g15501 | 5:21,738,283-21,742,921 | + | C2H5g22595 | CX5g039666 | LOC_Os05g45890 | Os05g0535500 | AET1 | Detail |
| C1H5g07739 | 5:21,743,275-21,746,906 | - | C2H5g08199 | CX5g036985 | LOC_Os05g45900 | Os05g0535600 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000660 | 1:33,685,668-33,685,886 | - | - | - | - | - | - | Detail |
| CX1g001012 | 1:33,687,598-33,690,154 | - | C1H1g30253 | C2H1g02011 | LOC_Os01g65520 | Os01g0876400 | - | Detail |
| CX1g001628 | 1:33,691,804-33,694,033 | + | C1H1g22038 | C2H1g10900 | LOC_Os01g65530 | Os01g0876500 | - | Detail |
| CX1g007177 | 1:33,694,970-33,695,674 | + | C1H1g04924 | C2H1g10900 | LOC_Os01g65530 | - | - | Detail |
| CX1g002032 | 1:33,707,385-33,712,537 | + | C1H1g04359 | C2H1g19025 | LOC_Os01g65550 | Os01g0876800 | - | Detail |
| CX1g002116 | 1:33,715,194-33,717,082 | - | C1H1g09258 | C2H1g06776 | LOC_Os01g65560 | - | - | Detail |
| CX1g003433 | 1:33,719,749-33,726,605 | + | C1H1g18223 | C2H1g13353 | LOC_Os01g65580 | Os01g0877300 | - | Detail |
| CX1g004771 | 1:33,729,218-33,731,484 | + | C1H1g21246 | C2H1g16026 | LOC_Os01g65590 | Os01g0877400 | - | Detail |
| CX1g006157 | 1:33,738,085-33,741,139 | + | C1H1g24943 | C2H1g15254 | LOC_Os01g65600 | Os01g0877500 | - | Detail |
| CX1g003741 | 1:33,747,670-33,748,182 | + | - | - | LOC_Os01g65610 | Os01g0698200 | - | Detail |
| CX1g003477 | 1:33,750,099-33,750,533 | - | C1H1g14047 | - | LOC_Os01g65620 | Os01g0877900 | - | Detail |
| CX1g000506 | 1:33,752,527-33,753,158 | - | C1H1g11540 | C2H1g10082 | LOC_Os01g65630 | Os01g0878000 | - | Detail |
| CX1g001997 | 1:33,760,068-33,760,301 | + | C1H1g07182 | - | - | Os01g0878200 | - | Detail |
| CX1g006109 | 1:33,766,783-33,770,641 | + | C1H1g24111 | C2H1g22867 | LOC_Os01g65650 | Os01g0878300 | - | Detail |
| CX1g006891 | 1:33,771,276-33,773,432 | - | C1H1g08942 | C2H1g21010 | LOC_Os01g65660 | Os01g0878400 | OsAAP5 | Detail |
| CX1g004452 | 1:33,781,775-33,785,706 | - | C1H1g29139 | C2H1g22822 | LOC_Os01g65670 | Os01g0878700 | - | Detail |
| CX1g005380 | 1:33,787,190-33,791,051 | - | C1H1g07438 | C2H1g05749 | LOC_Os01g65680 | Os01g0878800 | - | Detail |
| CX1g003006 | 1:33,798,752-33,799,339 | + | C1H1g20719 | - | LOC_Os01g65700 | Os01g0879200 | - | Detail |
| CX1g003321 | 1:33,800,677-33,801,354 | + | C1H1g25090 | - | LOC_Os01g65710 | Os01g0879300 | - | Detail |
| CX1g006723 | 1:33,803,441-33,806,099 | + | C1H1g02620 | C2H1g27566 | LOC_Os01g65720 | Os01g0879400 | - | Detail |