| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H1g02341 | 1:19,552-27,397 | + | C2H1g13015 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C1H1g23301 | 1:34,909-38,077 | + | C2H1g25732 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C1H1g05541 | 1:38,658-42,693 | + | C2H1g24136 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C1H1g18141 | 1:45,137-49,100 | + | C2H1g01770 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C1H1g06702 | 1:49,316-50,669 | + | C2H1g21686 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C1H1g15122 | 1:53,886-58,091 | + | C2H1g03140 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C1H1g26676 | 1:58,983-64,706 | + | C2H1g12741 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C1H1g29605 | 1:68,013-72,703 | + | C2H1g30020 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C1H1g15874 | 1:72,685-75,717 | - | C2H1g01369 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C1H1g31238 | 1:79,440-86,394 | + | C2H1g16597 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C1H1g30351 | 1:88,972-90,382 | + | C2H1g26722 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C1H1g07147 | 1:93,453-96,885 | + | C2H1g16862 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C1H1g23624 | 1:103,904-104,966 | + | C2H1g21224 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C1H1g19237 | 1:106,332-109,626 | + | C2H1g12981 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C1H1g02228 | 1:110,056-112,714 | + | C2H1g13148 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C1H1g19000 | 1:113,782-115,921 | + | C2H1g25133 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| C1H1g20467 | 1:116,248-118,728 | + | C2H1g01047 | CX1g001371 | LOC_Os01g01307 | Os01g0102700 | - | Detail |
| C1H1g21121 | 1:119,474-124,658 | + | C2H1g05282 | CX1g006904 | LOC_Os01g01312 | Os01g0102800 | OsCHR704, CHR704 | Detail |
| C1H1g31375 | 1:129,470-130,340 | - | C2H1g27348 | CX1g001497 | LOC_Os01g01340 | Os01g0102900 | LIR1, Lir1 | Detail |
| C1H1g31418 | 1:131,158-133,161 | - | C2H1g25360 | CX1g000859 | LOC_Os01g01350 | Os01g0103000 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g05843 | 1:4,407,490-4,408,767 | + | C1H1g27970 | CX1g005975 | LOC_Os01g09730 | Os01g0193400 | - | Detail |
| C2H1g21862 | 1:4,408,888-4,411,145 | - | C1H1g11468 | CX1g003550 | LOC_Os01g09740 | Os01g0193500 | - | Detail |
| C2H1g17174 | 1:4,413,170-4,417,512 | - | C1H1g10688 | CX1g000614 | LOC_Os01g09750 | Os01g0193600 | - | Detail |
| C2H1g04548 | 1:4,423,648-4,432,522 | + | C1H1g13152 | CX1g006629 | LOC_Os01g09760 | Os01g0193900 | OsALYL1 | Detail |
| C2H1g08327 | 1:4,432,798-4,436,269 | - | C1H1g06151 | CX1g002400 | LOC_Os01g09770 | Os01g0194000 | - | Detail |
| C2H1g05163 | 1:4,446,890-4,449,014 | - | C1H1g16281 | CX1g002653 | LOC_Os01g09790 | Os01g0194200 | - | Detail |
| C2H1g20037 | 1:4,454,004-4,458,589 | - | C1H1g29130 | CX1g000713 | LOC_Os01g09800 | Os01g0194300 | NH1, OsNH1, OsNPR1, OsNPR1/NH1, NPR1, OsPR2, PR2 | Detail |
| C2H1g05731 | 1:4,471,137-4,471,517 | + | C1H1g15115 | CX1g000442 | LOC_Os01g09830 | Os01g0194600 | - | Detail |
| C2H1g26832 | 1:4,481,098-4,483,672 | + | C1H1g00947 | CX1g005498 | LOC_Os01g09850 | Os01g0195000 | OsIDD2 | Detail |
| C2H1g03615 | 1:4,491,235-4,498,330 | - | C1H1g03034 | CX1g000509 | LOC_Os01g09860 | Os01g0195200 | - | Detail |
| C2H1g17887 | 1:4,508,755-4,509,393 | - | C1H1g10561 | CX1g001794 | LOC_Os01g09870 | Os01g0195300 | - | Detail |
| C2H1g12953 | 1:4,510,080-4,512,668 | - | - | - | - | - | - | Detail |
| C2H1g30117 | 1:4,514,337-4,515,203 | - | C1H1g31641 | CX1g003898 | LOC_Os01g09880 | Os01g0195400 | - | Detail |
| C2H1g28884 | 1:4,521,724-4,524,029 | - | C1H1g28666 | CX1g000703 | LOC_Os01g09890 | Os01g0195500 | - | Detail |
| C2H1g00669 | 1:4,526,288-4,526,542 | + | C1H1g30631 | - | - | - | - | Detail |
| C2H1g23471 | 1:4,532,493-4,532,820 | + | C1H1g18771 | CX1g006997 | LOC_Os01g09900 | Os01g0195700 | - | Detail |
| C2H1g25043 | 1:4,532,942-4,533,980 | + | C1H1g02897 | CX1g006997 | LOC_Os01g09900 | Os01g0195801 | - | Detail |
| C2H1g19433 | 1:4,541,970-4,542,264 | - | C1H1g13131 | CX12g016171 | LOC_Os12g41650 | Os12g0610200 | OsPIL11, OsbHLH102 | Detail |
| C2H1g29514 | 1:4,549,728-4,555,017 | + | C1H1g28746 | CX1g006997 | LOC_Os01g09930 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| C2H1g19303 | 1:4,570,603-4,572,287 | + | C1H1g18771 | CX1g006997 | LOC_Os01g09990 | Os01g0196300 | DPF, OsbHLH025 | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g002038 | 1:33,543,503-33,545,686 | + | C1H1g02581 | C2H1g08988 | LOC_Os01g65310 | Os01g0873700 | - | Detail |
| CX1g005957 | 1:33,546,679-33,553,065 | - | C1H1g07269 | C2H1g14444 | LOC_Os01g65320 | Os01g0873800 | - | Detail |
| CX1g003528 | 1:33,554,656-33,561,592 | - | C1H1g13757 | C2H1g05655 | LOC_Os01g65330 | Os01g0873900 | - | Detail |
| CX1g003166 | 1:33,569,522-33,573,248 | - | C1H1g26896 | C2H1g01794 | LOC_Os01g65350 | Os01g0874100 | OsdNK2 | Detail |
| CX1g000187 | 1:33,578,831-33,579,154 | + | - | - | - | - | - | Detail |
| CX1g005567 | 1:33,579,787-33,580,080 | - | - | - | - | - | - | Detail |
| CX1g006020 | 1:33,588,620-33,588,868 | + | - | - | - | Os01g0822501 | - | Detail |
| CX1g001179 | 1:33,589,789-33,590,737 | + | C1H1g24290 | C2H1g23370 | LOC_Os01g65370 | Os01g0874300 | MYB22 | Detail |
| CX1g003478 | 1:33,591,702-33,592,358 | + | C1H7g13200 | C2H1g23370 | - | - | - | Detail |
| CX1g006315 | 1:33,608,147-33,610,613 | + | C1H1g11453 | C2H1g22166 | LOC_Os01g65380 | Os01g0874700 | - | Detail |
| CX1g006909 | 1:33,616,529-33,618,145 | - | C1H1g12487 | C2H1g23932 | LOC_Os01g65400 | Os01g0874800 | - | Detail |
| CX1g000339 | 1:33,622,086-33,625,762 | + | C1H1g05548 | C2H1g14352 | LOC_Os01g65410 | Os01g0874900 | OsCADT1, LCRP, SHMT4 | Detail |
| CX1g000853 | 1:33,628,551-33,629,669 | - | C1H1g31376 | C2H1g27444 | LOC_Os01g65420 | Os01g0875000 | - | Detail |
| CX1g001730 | 1:33,642,393-33,644,639 | + | C1H1g11118 | C2H1g15980 | LOC_Os01g65440 | Os01g0875300 | - | Detail |
| CX1g002428 | 1:33,646,293-33,650,770 | - | C1H1g24481 | C2H1g28268 | LOC_Os01g65450 | Os01g0875400 | - | Detail |
| CX1g000719 | 1:33,654,034-33,660,537 | + | C1H1g11688 | C2H1g06632 | LOC_Os01g65460 | Os01g0875500 | - | Detail |
| CX1g004689 | 1:33,668,953-33,671,066 | + | C1H1g04147 | C2H1g04754 | LOC_Os01g65480 | Os01g0875700 | - | Detail |
| CX1g003607 | 1:33,672,253-33,673,507 | - | C1H1g31658 | C2H1g28608 | LOC_Os01g65490 | Os01g0875800 | - | Detail |
| CX1g007138 | 1:33,677,190-33,681,212 | + | C1H1g10887 | C2H1g12912 | LOC_Os01g65500 | Os01g0876100 | OsCLC1 | Detail |
| CX1g002720 | 1:33,682,594-33,683,757 | + | - | - | - | - | - | Detail |