| Hap1 ID | Location | Strand | Hap2 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C1H3g03441 | 3:994,508-997,871 | - | C2H3g02407 | CX3g026290 | LOC_Os03g02850 | Os03g0120300 | - | Detail |
| C1H3g10934 | 3:999,392-1,000,895 | - | C2H3g11600 | CX3g025360 | LOC_Os03g02860 | Os03g0120400 | - | Detail |
| C1H3g08539 | 3:1,007,973-1,011,218 | + | C2H3g16408 | CX3g028149 | LOC_Os03g02890 | Os03g0120800 | - | Detail |
| C1H3g19352 | 3:1,027,333-1,028,259 | + | C2H3g18948 | CX3g029289 | LOC_Os03g02900 | Os03g0120900 | - | Detail |
| C1H3g28264 | 3:1,045,562-1,049,655 | - | C2H3g18738 | CX3g025034 | LOC_Os03g02920 | Os03g0121200 | - | Detail |
| C1H3g20047 | 3:1,052,087-1,053,631 | - | C2H3g23557 | CX3g026688 | LOC_Os03g02939 | Os03g0121300 | - | Detail |
| C1H3g01141 | 3:1,060,364-1,061,638 | + | C2H3g04065 | CX3g025202 | LOC_Os03g02960 | Os03g0121700 | - | Detail |
| C1H3g02111 | 3:1,061,738-1,070,945 | - | C2H3g16968 | CX3g027774 | LOC_Os03g02970 | Os03g0121800 | DCL1, Dcl1, OsDCL1, osDCL1, Os-DCL1 | Detail |
| C1H3g23785 | 3:1,082,343-1,088,301 | + | C2H3g23905 | CX3g028931 | LOC_Os03g02980 | Os03g0122000 | - | Detail |
| C1H3g05090 | 3:1,096,037-1,096,413 | + | C2H3g27024 | - | - | - | - | Detail |
| C1H3g07706 | 3:1,096,600-1,099,509 | + | C2H3g24994 | CX3g026004 | LOC_Os03g03000 | Os03g0122100 | - | Detail |
| C1H3g24387 | 3:1,102,330-1,104,223 | - | C2H3g11967 | CX3g025069 | LOC_Os03g03020 | Os03g0122200 | - | Detail |
| C1H3g05611 | 3:1,105,304-1,111,129 | - | C2H3g05774 | CX3g031243 | LOC_Os03g03034 | Os03g0122300 | - | Detail |
| C1H3g26838 | 3:1,126,687-1,131,268 | - | C2H3g15040 | CX3g027036 | LOC_Os03g03070 | Os03g0122600 | - | Detail |
| C1H3g05142 | 3:1,150,988-1,152,633 | - | C2H3g18287 | CX3g025481 | LOC_Os03g03100 | Os03g0834466 | - | Detail |
| C1H3g05064 | 3:1,164,019-1,171,711 | - | C2H9g16327 | CX3g025474 | LOC_Os04g22720 | Os08g0392500 | - | Detail |
| C1H3g18665 | 3:1,174,055-1,174,690 | + | C2H3g16267 | CX3g031045 | - | - | - | Detail |
| C1H3g16789 | 3:1,175,364-1,178,417 | + | C2H3g19854 | CX3g030103 | LOC_Os03g03130 | Os03g0123100 | OsSCE2 | Detail |
| C1H3g27844 | 3:1,179,722-1,181,180 | + | C2H3g21601 | CX3g026041 | LOC_Os03g03140 | Os03g0123200 | - | Detail |
| C1H3g09795 | 3:1,184,106-1,188,005 | + | C2H3g04889 | CX3g029979 | LOC_Os03g03150 | Os03g0123300 | - | Detail |
| Hap2 ID | Location | Strand | Hap1 ID | T2T ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| C2H1g13015 | 1:30,344-38,194 | + | C1H1g02341 | CX1g002198 | LOC_Os01g01010 | Os01g0100100 | - | Detail |
| C2H1g25732 | 1:48,873-52,060 | + | C1H1g23301 | CX1g002858 | LOC_Os01g01030 | Os01g0100400 | - | Detail |
| C2H1g24136 | 1:52,640-56,672 | + | C1H1g05541 | CX1g003623 | LOC_Os01g01040 | Os01g0100500 | - | Detail |
| C2H1g01770 | 1:59,118-63,079 | + | C1H1g18141 | - | LOC_Os01g01050 | Os01g0100600 | - | Detail |
| C2H1g21686 | 1:63,306-64,660 | + | C1H1g06702 | CX11g013230 | LOC_Os01g01060 | Os01g0100700 | - | Detail |
| C2H1g03140 | 1:68,024-72,245 | + | C1H1g15122 | CX1g001772 | LOC_Os01g01070 | Os01g0100800 | - | Detail |
| C2H1g12741 | 1:73,014-78,891 | + | C1H1g26676 | CX1g003961 | LOC_Os01g01080 | Os01g0100900 | SPL1, OsSPL1 | Detail |
| C2H1g30020 | 1:80,174-82,594 | + | C1H1g29605 | CX1g005152 | LOC_Os01g01115 | Os01g0101150 | - | Detail |
| C2H1g12698 | 1:83,621-84,861 | + | C1H1g29605 | CX1g004895 | LOC_Os01g01120 | Os01g0101200 | - | Detail |
| C2H1g01369 | 1:84,843-88,848 | - | C1H1g15874 | CX1g005861 | LOC_Os01g01130 | Os01g0101300 | - | Detail |
| C2H1g16597 | 1:92,643-99,594 | + | C1H1g31238 | CX1g001476 | LOC_Os01g01150 | Os01g0101600 | - | Detail |
| C2H1g05732 | 1:100,560-100,965 | + | - | - | - | - | - | Detail |
| C2H1g26722 | 1:102,163-103,621 | + | C1H1g30351 | CX1g002150 | LOC_Os01g01160 | Os01g0101700 | - | Detail |
| C2H1g16862 | 1:106,953-110,388 | + | C1H1g07147 | CX1g000559 | LOC_Os01g01170 | Os01g0101800 | - | Detail |
| C2H1g08637 | 1:110,582-110,800 | - | C1H1g02987 | CX1g003279 | LOC_Os01g01180 | Os01g0101900 | - | Detail |
| C2H1g21658 | 1:111,441-113,036 | - | C1H1g29256 | CX1g002179 | LOC_Os01g01190 | Os01g0102000 | OsNPC6 | Detail |
| C2H1g21224 | 1:117,410-118,475 | + | C1H1g23624 | CX1g004841 | LOC_Os01g01280 | Os01g0102300 | OsTLP27 | Detail |
| C2H1g12981 | 1:121,812-123,137 | + | C1H1g19237 | CX1g005639 | LOC_Os01g01290 | Os01g0102400 | OsNF-YC9, OsHAP5H | Detail |
| C2H1g13148 | 1:123,569-126,216 | + | C1H1g02228 | CX1g005627 | LOC_Os01g01295 | Os01g0102500 | - | Detail |
| C2H1g25133 | 1:127,278-129,395 | + | C1H1g19000 | CX1g006384 | LOC_Os01g01302 | Os01g0102600 | - | Detail |
| T2T ID | Location | Strand | Hap1 ID | Hap2 ID | MSU7 ID | RAPDB ID | Symbol | Details |
|---|---|---|---|---|---|---|---|---|
| CX1g000677 | 1:32,643,794-32,644,494 | - | C1H1g30766 | C2H1g15087 | LOC_Os01g63510 | Os01g0854500 | QHB | Detail |
| CX1g004974 | 1:32,652,889-32,654,526 | + | C1H1g14296 | C2H1g05023 | LOC_Os01g63540 | Os01g0854800 | OsCYP86A9 | Detail |
| CX1g000343 | 1:32,656,423-32,659,339 | - | C1H1g06653 | C2H1g11964 | LOC_Os01g63580 | Os01g0855000 | - | Detail |
| CX1g006450 | 1:32,661,169-32,661,510 | - | - | - | - | - | - | Detail |
| CX1g005551 | 1:32,672,739-32,673,029 | - | - | - | - | - | - | Detail |
| CX1g005974 | 1:32,677,799-32,679,442 | + | C1H1g12873 | C2H1g27825 | LOC_Os01g63620 | Os01g0855200 | - | Detail |
| CX1g003617 | 1:32,694,370-32,696,499 | + | C1H1g14003 | C2H1g08166 | LOC_Os01g63680 | Os01g0855400 | Os2R_MYB17 | Detail |
| CX1g004624 | 1:32,699,861-32,701,285 | - | C1H1g30734 | - | LOC_Os01g63690 | Os01g0855600 | - | Detail |
| CX1g004920 | 1:32,708,006-32,711,592 | + | C1H1g14553 | C2H1g04964 | LOC_Os01g63710 | Os01g0856000 | - | Detail |
| CX1g003928 | 1:32,734,776-32,734,976 | + | - | - | - | - | - | Detail |
| CX1g000872 | 1:32,737,308-32,737,460 | - | - | - | - | Os01g0728000 | - | Detail |
| CX1g001894 | 1:32,741,086-32,746,178 | + | C1H1g19008 | C2H1g15998 | LOC_Os01g63770 | Os01g0856500 | - | Detail |
| CX1g000142 | 1:32,748,445-32,753,452 | - | C1H1g09781 | C2H1g00745 | LOC_Os01g63780 | Os01g0856600 | - | Detail |
| CX1g001837 | 1:32,758,123-32,758,572 | + | C1H1g00466 | C2H5g12625 | LOC_Os01g63800 | Os01g0856800 | - | Detail |
| CX1g000133 | 1:32,761,537-32,763,440 | + | C1H1g21752 | C2H1g08502 | LOC_Os01g63810 | Os01g0856900 | SBDCP1 | Detail |
| CX1g007132 | 1:32,764,370-32,771,576 | - | C1H1g03217 | C2H1g12263 | LOC_Os01g63820 | Os01g0857000 | - | Detail |
| CX1g006058 | 1:32,774,560-32,775,909 | - | C1H1g17452 | C2H1g17962 | LOC_Os01g63830 | Os01g0857200 | - | Detail |
| CX1g002484 | 1:32,778,027-32,781,472 | - | C1H1g18078 | C2H1g17753 | LOC_Os01g63840 | Os01g0857300 | - | Detail |
| CX1g005468 | 1:32,781,964-32,787,815 | - | C1H1g25524 | C2H1g12645 | LOC_Os01g63854 | Os01g0857400 | - | Detail |
| CX1g001069 | 1:32,796,878-32,801,511 | + | C1H1g22923 | C2H1g10552 | LOC_Os01g63870 | Os01g0857500 | - | Detail |